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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAATGGAGAAAATATGGACAAAAGATATCAAAGGGCAATCCTTGTCCTCGGGCCTATTATCGCTGCAACATGGGAACTGCATGTCCAGTTCGCAAGCAGgttggtgcagatttttttcttggcaacattttgatgtcagcacctcaaatcctaagtttaaccaatttcctgattcttcatctacgctttatatatttta...

Basic information

species Glycine max
transcript GLYMA13G17800.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G17800.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G62300.1 (Arabidopsis thaliana), 5'ss of exon 5
TCAATGGAGAAAATATGGACAAAAGATATCAAAGGGCAATCCTTGTCCTCGGGCCTATTATCGCTGCAACATGGGAACTGCATGTCCAGTTCGCAAGCAGgttggtgc----agatttttttcttgg--caaca---ttttgatgtcagcacctcaaa---tcctaagtttaaccaatttcctgattcttcatctacgctttatatatttta----------
|||||||||||||||||| || |||||  | || || ||||||||||| ||||| ||||| |||||||  ||||  || |  ||||| |||||||| || ||  |       ||||||     ||||   || |   | ||| ||| |  || | | |   | | | || ||     || | |||||    |  |||| |   |      |           
TCAATGGAGAAAATATGGCCAGAAGATGGCCAAAGGGAATCCTTGTCCGCGGGCATATTACCGCTGCACGATGGCCACGGGCTGTCCCGTTCGCAAACAAgtaagatttaaaagatttaaccattggactaaaagattcttgttgtaaaaacattagagatttcaatgtatatatgtttgcgtgattggctaa-tacgttcggtccgaaatgatatttatag

upper sequence: GLYMA13G17800.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv19s0090g00840.t01 (Vitis vinifera), 5'ss of exon 5
TCAATGGAGAAAATATGGACAAAAGATATCAAAGGGCAATCCTTGTCCTCGGGCCTATTATCGCTGCAACATGGGAACTGCATGTCCAGTTCGCAAGCAGgttggtgcagatttttttcttggcaacattttgatgtcagcacctcaaatcctaagtttaaccaatttcctgattcttcatctacgctttatatatttta--------
 ||||||||||| ||||||||||||||  | || || || || || ||||| || |||||||| |||| ||||| |||||| |||||||||||||| || ||   |||   |  | |||    || | || | |  |   ||     | |   |||| |||  ||       |   ||  |    |  |   || |  |         
CCAATGGAGAAAGTATGGACAAAAGATGGCGAAAGGAAACCCATGCCCTCGAGCTTATTATCGATGCACCATGGCAACTGCTTGTCCAGTTCGCAAACAAgt--atgc---tcctcttccaatcacccttgttacattc-cattcttagtttcaagtgtaattaagaaggaaaaatttattaattggatggaatttgatggcaaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17964335|gb|BM271072.1|BM271072
EST:     GGGCCTATTATCGCTGCAACATGGGAACTGCATGTCCAGTTCGCAAGCAG                         GTTCAAAGGTGTGCTGAAGATGAGAGTGTTGTCATCACAACCTATGAGGGG
genomic: GGGCCTATTATCGCTGCAACATGGGAACTGCATGTCCAGTTCGCAAGCAGgttggtgcag ... tttgtaacagGTTCAAAGGTGTGCTGAAGATGAGAGTGTTGTCATCACAACCTATGAGGGG