Sequence
atgc intronic sequence ATGC exonic sequenceTTGGGAAATTTTTGGAGCTGAGTTTTTCAAATCATGCAGCAGCAAGCAGGGTTGCAAGTTGTGGTCATTCTCTCCACAGAGATTGTTTAAGATTCTATGGgtacacttttctcctcctaaattgaatctataataaattagggtgtggtggaatatttgcttgaaagagtaaaggggagtcaaggagtggtttaaactct...
Basic information
species | Glycine max |
transcript | GLYMA13G17510.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G17510.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os08g34950.1 (Oryza sativa), 5'ss of exon 6
TTGGGAAATTTTTGGAGCTGAGTTTTTCAAATCATGCAGCAGCAAGCAGGGTTGCAAGTTGTGGTCATTCTCTCCACAGAGATTGTTTAAGATTCTATGGgta-cacttttctcctcctaaattgaatctataataaattagggtgtggtgga-atatttgcttgaaagagtaaaggggagtcaaggagtggtttaaactct
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TTGGAAAATTTCTGGAACTTAGCTTCTCAAATCATGCGGCAGCTAGTAGGGTAGCCAGTTGTGGCCATTCTCTTCACAGGGATTGCCTTCGTTTTTACGGgtatcccctcactcctcttcaatttcat-taaattggtaaatactatggcttacatgtttgtattttag---------------------------------
upper sequence: GLYMA13G17510.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G153722_T01 (Zea mays), 5'ss of exon 6
TTGGGAAATTTTTGGAGCTGAGTTTTTCAAATCATGCAGCAGCAAGCAGGGTTGCAAGTTGTGGTCATTCTCTCCACAGAGATTGTTTAAGATTCTATGGgtacacttttctcctcctaaattgaatctataataaattagggtgtggtggaatatttgcttgaaagagtaaaggggagtcaaggagtggtttaaactct
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TTGGAAAATTTTTGGAACTTAGTTTTTCAAACCATGCGGCAGCAAGTAGGGTTGCCAGCTGTGGTCATTCACTTCACAGGGATTGCCTTCGCTTTTACGGgtacattattatctctt---atccatcttgtcatattgttaagggttgtaccttacatgtgttttcatttcag---------------------------
upper sequence: GLYMA13G17510.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv11s0016g00360.t01 (Vitis vinifera), 5'ss of exon 9
TTGGGAAATTTTTGGAGCTGAGTTTTTCAAATCATGCAGCAGCAAGCAGGGTTGCAAGTTGTGGTCATTCTCTCCACAGAGATTGTTTAAGATTCTATGGgtacacttttctcctcctaaattgaatctataataaattagggtgtggtggaatat-ttgctt----gaaagagtaaaggggagtcaaggagtggtttaaactct
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TTGGAAAATTTTTGGAACTCAGCTTTTCAAACCATGCTGCTGCAAGCAGAGTTGCTAGTTGCGGTCATTCCCTTCATAGGGATTGCCTACGGTTTTATGGgtatgcttt-ccctttaaacaatgtttatgttgtgatatcaaggctgataaactgtgttgctttttaacaacagaatactatggacatggcctcgtgcagg----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|207816930|gb|GD788471.1|GD788471EST: GAGATTGTTTAAGATTCTATGG TTTTGGGAAGATGGTTGCCTGCTTTCGTTATGCTTCAATTCACCTTCATTC
genomic: GAGATTGTTTAAGATTCTATGGgtacactttt ... ctgtgtgcagTTTTGGGAAGATGGTTGCCTGCTTTCGTTATGCTTCAATTCACCTTCATTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTGGGAAATTTTTGGAGCTGAGTTTTTCAAATCATGCAGCAGCAAGCAGGGTTGCAAGTTGTGGTCATTCTCTCCACAGAGATTGTTTAAGATTCTATGGgtacacttttctcctcctaaattgaatctataataaattagggtgtggtggaatatttgcttgaaagagtaaaggggagtcaaggagtggtttaaactct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtggtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggggagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggagtgg