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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACGTAGAACAATACAATAAATTGGAAGATCCAACTGATGAGGAAAATGACATGTTGGATCTAGCTTTTGGGCTTACTGAAACgtgagtttcctatctatgaacttgggatttgaaattttcgttttccgtttttgtccgcctcaaattaagcattgactaattttgggaactatgcag

Basic information

species Glycine max
transcript GLYMA13G17370.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G17370.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv11s0016g00530.t01 (Vitis vinifera), 5'ss of exon 7
GACGTAGAACAATACAATAAATTGGAAGATCCAACTGATGAGGAAAATGACATGTTGGATCTAGCTTTTGGGCTTACTGAAACgtgagtttcctat-ctatgaacttgggatttgaaattttcgttttccgtttttgtccgcctcaaattaagcattgactaattttgggaactatgcag
||| | ||| | ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||| || |    | | |||||| ||  |     |||| |   |     ||            ||| |||     |    ||||| ||  || |||||
GACATGGAATACTACAATAAATTGGAAGACCCAACTGATGAGGAAAATGACATGTTGGATCTGGCTTTTGGGCTTACAGAAACgtgggtctttgttaccatgaacctgaaac---gaattcttactcaatattca----------aaactaaatggagttctatttttggggctttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209709539|gb|BW668417.1|BW668417
EST:     ACTGATGAGGAAAATGACATGTTGGATCTAGCTTTTGGGCTTACTGAAAC                         ATCACGTCTGGGTTGCCAAGTGATTGCTAAACCCGAACTTGATGGAATTCG
genomic: ACTGATGAGGAAAATGACATGTTGGATCTAGCTTTTGGGCTTACTGAAACgtgagtttcc ... aactatgcagATCACGTCTGGGTTGCCAAGTGATTGCTAAACCCGAACTTGATGGAATTCG
EST: gi|7284255|gb|AW596850.1|AW596850
EST:     ACTGATGAGGAAAATGACATGTTGGATCTAGCTTTTGGGCTTACTGAAAC                         ATCACGTCTGGGTTGCCAAGTGATTGCTAAACCCGAACTTGATGGAATTCG
genomic: ACTGATGAGGAAAATGACATGTTGGATCTAGCTTTTGGGCTTACTGAAACgtgagtttcc ... aactatgcagATCACGTCTGGGTTGCCAAGTGATTGCTAAACCCGAACTTGATGGAATTCG
EST: gi|254329164|gb|GR833536.1|GR833536
EST:     ACTGATGAGGAAAATGACATGTTGGATCTAGCTTTTGGGCTTACTGAAAC                         ATCACGTCTGGGTTGCCAAGTGATTGCTAAACCCGAACTTGATGGAATTCG
genomic: ACTGATGAGGAAAATGACATGTTGGATCTAGCTTTTGGGCTTACTGAAACgtgagtttcc ... aactatgcagATCACGTCTGGGTTGCCAAGTGATTGCTAAACCCGAACTTGATGGAATTCG
EST: gi|22931821|gb|BU548960.1|BU548960
EST:     ACTGATGAGGAAAATGACATGTTGGATCTAGCTTTTGGGCTTACTGAAAC                         ATCACGTCTGGGTTGCCAAGTGATTGCTAAACCCGAACTTGATGGAATTCG
genomic: ACTGATGAGGAAAATGACATGTTGGATCTAGCTTTTGGGCTTACTGAAACgtgagtttcc ... aactatgcagATCACGTCTGGGTTGCCAAGTGATTGCTAAACCCGAACTTGATGGAATTCG
EST: gi|14125826|gb|BG790264.1|BG790264
EST:     ACTGATGAGGAAAATGACATGTTGGATCTAGCCTTTGGGCTTACTGAAAC                         ATCACGTCTGGGTTGCCAAGTGATTGCTAAACCCGAACTTGATGGAATTCG
genomic: ACTGATGAGGAAAATGACATGTTGGATCTAGCTTTTGGGCTTACTGAAACgtgagtttcc ... aactatgcagATCACGTCTGGGTTGCCAAGTGATTGCTAAACCCGAACTTGATGGAATTCG
EST: gi|254329165|gb|GR833537.1|GR833537
EST:     ACTGATGAGGAAAATGACATGTTGGATCTAGCTTTTGGGCTTACTGAAAC                         ATCACGTCTGGGTTGCCAAGTGATTGCTAAACCCGAACTTGATGGAATTCG
genomic: ACTGATGAGGAAAATGACATGTTGGATCTAGCTTTTGGGCTTACTGAAACgtgagtttcc ... aactatgcagATCACGTCTGGGTTGCCAAGTGATTGCTAAACCCGAACTTGATGGAATTCG
EST: gi|5760457|gb|AI965820.1|AI965820
EST:     ACTGATGAGGAAAATGACATGTTGGATCTAGCTTTTGGGCTTACTGAAAC                         ATCACGTCTGGGTTGCCAAGTGATTGCTAAACCCGAACTTGATGGAATTCG
genomic: ACTGATGAGGAAAATGACATGTTGGATCTAGCTTTTGGGCTTACTGAAACgtgagtttcc ... aactatgcagATCACGTCTGGGTTGCCAAGTGATTGCTAAACCCGAACTTGATGGAATTCG