1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTCACTTTAATATTTTTGTCGGTGACCTTAGTCCTGAGGTTACAGATGCGACATTGTATGCTTGCTTCTCTGTATATCCTAGTTGTTCgtaagtttttatataccctctctatttttccttctcattgctattttattttgtggtttacttcagatattttgttggaagtgcagatacctgaatgtatatgtgaaatcaattcatatttgtagtatcatgatatggtaattatggtatgttggttacag
species | Glycine max |
transcript | GLYMA13G17200.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GTTACAGATGCGACATTGTATGCTTGCTTCTCTGTATATCCTAGTTGNTC TGATGCAAGGGTAATGTGGGATCAGAAGACAGGCCGTTCCAGGGGATTTGGEST: gi|7029172|gb|AW458955.1|AW458955
genomic: GTTACAGATGCGACATTGTATGCTTGCTTCTCTGTATATCCTAGTTGTTCgtaagttttt ... ttggttacagTGATGCAAGGGTAATGTGGGATCAGAAGACAGGCCGTTCCAGGGGATTTGG
EST: GTTACAGATGCGACATTGTATGCTTGCTTCTCTGTATATCCTAGTTGTTC TGATGCAAGGGTAATGTGGGATCAGAAGACAGGCCGTGCCAGGGGATTTGGEST: gi|193625489|gb|FK577477.1|FK577477
genomic: GTTACAGATGCGACATTGTATGCTTGCTTCTCTGTATATCCTAGTTGTTCgtaagttttt ... ttggttacagTGATGCAAGGGTAATGTGGGATCAGAAGACAGGCCGTTCCAGGGGATTTGG
EST: ATGCGACATTGTATGCTTGCTTCTCTGTATATCCTAGTTGTTC TGATGCAAGGGTAATGTGGGATCAGAAGACAGGCCGTTCCAGGGGATTTGGEST: gi|42723064|gb|CK768963.1|CK768963
genomic: ATGCGACATTGTATGCTTGCTTCTCTGTATATCCTAGTTGTTCgtaagttttt ... ttggttacagTGATGCAAGGGTAATGTGGGATCAGAAGACAGGCCGTTCCAGGGGATTTGG
EST: GTTACAGATGCGACATTGTATGCTTGCTTCTCTGTATATCCTAGTTGTTC TGATGCAAGGGTAATGTGGGATCAGAAGACAGGCCGTTCCAGGGGATTTGG
genomic: GTTACAGATGCGACATTGTATGCTTGCTTCTCTGTATATCCTAGTTGTTCgtaagttttt ... ttggttacagTGATGCAAGGGTAATGTGGGATCAGAAGACAGGCCGTTCCAGGGGATTTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCACTTTAATATTTTTGTCGGTGACCTTAGTCCTGAGGTTACAGATGCGACATTGTATGCTTGCTTCTCTGTATATCCTAGTTGTTCgtaagtttttatataccctctctatttttccttctcattgctattttattttgtggtttacttcagatattttgttggaagtgcagatacctgaatgtatatgtgaaatcaattcatatttgtagtatcatgatatggtaattatggtatgttggttacag
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