1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CAAAATATTGGTTTGAAATAATAGAAAGTTATGTACGGGCTTTCCGTTGGGAGGATTACAACTTGAGAAATGTAATGGACATGAGGGCAGGATTTGGAGGgtatgagagtattacatttcttgctttctttttctgttatatattacatttgtcggttattaggtttctgtagaatgattgtctaatgttgttgttatccgtgtgtgtattatgtcgttgataactgcag
species | Glycine max |
transcript | GLYMA13G09520.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GAGGATTACAACTTGAGAAATGTAATGGACATGAGGGCAGGATTTGGAGG AGTTGCTGCTGCGCTGCATGATCTCCAGATTGACTGTTGGGTTATGAATGTEST: gi|13481740|gb|BG511083.1|BG511083
genomic: GAGGATTACAACTTGAGAAATGTAATGGACATGAGGGCAGGATTTGGAGGgtatgagagt ... ataactgcagAGTTGCTGCTGCGCTGCATGATCTCCAGATTGACTGTTGGGTTATGAATGT
EST: GAGGATTACAACTTGAGAAATGTAATGGACATGAGGGCAGGATTTGGAGG AGTTGCTGCTGCGCTGCATGATCTCCAGATTGACTGTTGGGTTATGAATGTEST: gi|151412439|gb|EV282251.1|EV282251
genomic: GAGGATTACAACTTGAGAAATGTAATGGACATGAGGGCAGGATTTGGAGGgtatgagagt ... ataactgcagAGTTGCTGCTGCGCTGCATGATCTCCAGATTGACTGTTGGGTTATGAATGT
EST: GAGGATTACAACTTGAGAAATGTAATGGACATGAGGGCAGGATTTGGAGG AGTTGCTGCTGCGCTGCATGATCTCCAGATTGACTGTTGGGTTATGAATGT
genomic: GAGGATTACAACTTGAGAAATGTAATGGACATGAGGGCAGGATTTGGAGGgtatgagagt ... ataactgcagAGTTGCTGCTGCGCTGCATGATCTCCAGATTGACTGTTGGGTTATGAATGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAAATATTGGTTTGAAATAATAGAAAGTTATGTACGGGCTTTCCGTTGGGAGGATTACAACTTGAGAAATGTAATGGACATGAGGGCAGGATTTGGAGGgtatgagagtattacatttcttgctttctttttctgttatatattacatttgtcggttattaggtttctgtagaatgattgtctaatgttgttgttatccgtgtgtgtattatgtcgttgataactgcag
- - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG