Sequence
atgc intronic sequence ATGC exonic sequenceTGTGAAAGGTTGTGATGATGCAAAGCAAGAACTTGAGGAAGTTGTGGAGTACCTAAAAAATCCATCTAAGTTTACACGCCTTGGAGGAAAGTTGCCAAAGgtctgaagaggttaatttgtcatttttttttcttttttttcctgagcttttttcatattcctattttctatgtatagacttattcttatttcttggtagg...
Basic information
species | Glycine max |
transcript | GLYMA13G08160.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G08160.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G004040_T01 (Zea mays), 5'ss of exon 6
TGTGAAAGGTTGTGATGATGCAAAGCAAGAACTTGAGGAAGTTGTGGAGTACCTAAAAAATCCATCTAAGTTTACACGCCTTGGAGGAAAGTTGCCAAAGgt-------ctgaagaggttaatttgt--catttttttttcttttttttcctgagcttttttcatattcctattttctatgtatagacttat---tcttatttcttggtagg-------------------------
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TGTCAAAGGTTGTGATGATGCAAAAAAGGAACTTGAGGAAGTAGTTGAGTATCTCAAGAACCCTTCAAAGTTCACTCGCCTTGGTGGAAAGCTACCTAAGgtaatcactctgtggcaccctgcgagtaacatttattgccaccttgctccatgagtttatctgttgtttttattggatggttgagctgttgtgaatcttgctctttaatgtattcctcttatacttttactttgcag
upper sequence: GLYMA13G08160.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G156069_T01 (Zea mays), 5'ss of exon 6
TGTGAAAGGTTGTGATGATGCAAAGCAAGAACTTGAGGAAGTTGTGGAGTACCTAAAAAATCCATCTAAGTTTACACGCCTTGGAGGAAAGTTGCCAAAGg---tctgaagaggttaatttgt------catttttttttcttttttttcctgagctttttt-catattcctattttctat-gtatagacttattcttatt--tcttggtagg--------------------------
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TGTCAAAGGTTGTGATGATGCAAAAAAGGAACTTGAGGAGGTAGTTGAGTATCTCAAGAACCCTTCAAAGTTCACTCGCCTTGGTGGAAAGCTACCTAAGgtaatcactctatgccatctcgcgagtaacatttatcgtcaccttgctccatgagttcctctatatatctgtcgcttttattggatgattgaactgttatgaatcttgctctgtaatgaattcctcctgtcctttgcag
upper sequence: GLYMA13G08160.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G53170.1 (Arabidopsis thaliana), 5'ss of exon 6
TGTGAAAGGTTGTGATGATGCAAAGCAAGAACTTGAGGAAGTTGTGGAGTACCTAAAAAATCCATCTAAGTTTACACGCCTTGGAGGAAAGTTGCCAAAGgtctgaagaggttaatttgtcatttttttttc-----ttttttttcctgagcttttttcatattcctattttctatgta-tagacttattcttatttcttggtagg----------------------
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CGTAAAGGGTTGTGATGATGCAAAACAAGAGCTCGAAGAGGTAGTTGAATATCTCAAAAATCCATCAAAGTTTACCCGCCTTGGAGGAAAGTTGCCAAAGgtatagac---tttctttgttactttgcatttgagaatatacaattgagaagtctttgcatttgattttctcccgtctactaaagttagcattttgacctgaaacatttctgaaatgtttgcctccag
upper sequence: GLYMA13G08160.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv16s0050g02630.t01 (Vitis vinifera), 5'ss of exon 6
TGTGAAAGGTTGTGATGATGCAAAGCAAGAACTTGAGGAAGTTGTGGAGTACCTAAAAAATCCATCTAAGTTTACACGCCTTGGAGGAAAGTTGCCAAAGgtctg-aagaggttaatttgtcatttttttttcttttttttcctgagcttttttcatattcctattttctatgta-tagacttattcttatttcttggtagg
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TGTGAAAGGCTGTGATGATGCAAAACAGGAGCTTGAGGAAGTAGTGGAGTACCTCAAAAACCCTGCAAAGTTTACTAGACTTGGGGGGAAATTGCCAAAGgtttgtaaaaagacattttgtt-cttcaagtacataatcttattgcacaaaatggttatgcatatattctgctcaataccatggatgatggatctctctga-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193689513|gb|FK630996.1|FK630996EST: ACCTAAAAAATCCATCTAAGTTTACACGCCTTGGAGGAAAGTTGCCAAAG GGGATTCTTTTGACAGGAGCACCTGGAACTGGAAAAACTCTGCTAGCCAAG
genomic: ACCTAAAAAATCCATCTAAGTTTACACGCCTTGGAGGAAAGTTGCCAAAGgtctgaagag ... ctcttttcagGGGATTCTTTTGACAGGAGCACCTGGAACTGGAAAAACTCTGCTAGCCAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGTGAAAGGTTGTGATGATGCAAAGCAAGAACTTGAGGAAGTTGTGGAGTACCTAAAAAATCCATCTAAGTTTACACGCCTTGGAGGAAAGTTGCCAAAGgtctgaagaggttaatttgtcatttttttttcttttttttcctgagcttttttcatattcctattttctatgtatagacttattcttatttcttggtagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA