1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CAATTGCTCTCTCTGAGGATCATAAGCCAAATAGAAGTGATGAGCGGAAGAGAATTGAGAATGCTGGTGGTGTTGTCATGTGGGCAGgtgagatacaatatttcaagcatataaatagcatcattcaatagttctgttaatattctatttctgccacatatagtgcaacatacaatggggatgggtc...
species | Glycine max |
transcript | GLYMA13G08090.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TGATGAGCGGAAGAGAATTGAGAATGCTGGTGGTGTTGTCATGTGGGCAG -TACTTGGAGGEST: gi|298196173|gb|HO044564.1|HO044564
genomic: TGATGAGCGGAAGAGAATTGAGAATGCTGGTGGTGTTGTCATGTGGGCAGgtgagataca ... tgctgtccagGTACTTGGAGG
EST: TGATGAGCGGAAGAGAATTGAGGATGCTGGTGGTGTTGTCATGTGGGCAG GTACTTGGAGGGTAGGAGGGGTGCTAGCAATGTCTCGTGCCEST: gi|5508875|gb|AI855433.1|AI855433
genomic: TGATGAGCGGAAGAGAATTGAGAATGCTGGTGGTGTTGTCATGTGGGCAGgtgagataca ... tgctgtccagGTACTTGGAGGGTAGGAGGGGTGCTAGCAATGTCTCGTGCC
EST: AGCGGAAGAGAATTGAGAATGCTGGTGGTGTTGTCATGTGGGCAG GTACTTGGAGGGTAGGAGGGGTGCTAGCAATGTCTCGTGCCTTTGGTAACC
genomic: AGCGGAAGAGAATTGAGAATGCTGGTGGTGTTGTCATGTGGGCAGgtgagataca ... tgctgtccagGTACTTGGAGGGTAGGAGGGGTGCTAGCAATGTCTCGTGCCTTTGGTAACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAATTGCTCTCTCTGAGGATCATAAGCCAAATAGAAGTGATGAGCGGAAGAGAATTGAGAATGCTGGTGGTGTTGTCATGTGGGCAGgtgagatacaatatttcaagcatataaatagcatcattcaatagttctgttaatattctatttctgccacatatagtgcaacatacaatggggatgggtc
- - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggggatg