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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGACCATACCTGAGATACGCCAACACCCATGGTTCCAAGTTCATCTACCGCGTTATTTAGCAGTGCCACCACCAGATACACTGCAACAAGCCAAAAAGgtttggtttttacttgtttttgggcttctccttttttgttaatttttagttcatacaatagttcttttgtaatatttaattgggaaaagagtttttaggc...

Basic information

species Glycine max
transcript GLYMA13G05700.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G05700.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv14s0108g01230.t01 (Vitis vinifera), 5'ss of exon 6
GATGACCATACCTGAGATACGCCAACACCCATGGTTCCAAGTTCATCTACCGCGTTATTTAGCAGTGCCACCACCAGATACACTGCAACAAGCCAAAAAGgtttggtttttacttgtttttgggcttctccttttttgttaatttttagttcatacaatagttcttttgtaatattta-attgggaaaagagtttttaggc
 ||||| || |||||||| || || |||||||||||||||| |||||| || || ||||| || || || ||||| || ||| | |||||||| |||||||||||||  | | ||| ||      || |  |   |   |  ||   |  |      ||   |   | | |   |||  | |     || |  ||  |   
AATGACAATTCCTGAGATTCGTCAGCACCCATGGTTCCAAGCTCATCTTCCTCGCTATTTGGCTGTACCCCCACCTGACACAATTCAACAAGCAAAAAAGgtttggtgataatttgattgcttatttgttttccatcaatgcttgcaaactggctttatgcctgcatggaatagtttggactatcttaacaacttaaaca-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193417616|gb|FK382986.1|FK382986
EST:     AACAAGCCAAAAAG                         ATTGATGAGGAGATTCTTCAGGAAGTGGTTAATATGGGATTTGACAGGAAT
genomic: AACAAGCCAAAAAGgtttggtttt ... ggttttgtagATTGATGAGGAGATTCTTCAGGAAGTGGTTAATATGGGATTTGACAGGAAT
EST: gi|208287380|gb|GE084848.1|GE084848
EST:     CGCGTTATTTAGCAGTGCCACCACCAGATACACTGCAACAAGCCAAAAAG                         ATTGATGAGGAGATTCTTCAGGAAGTGGT
genomic: CGCGTTATTTAGCAGTGCCACCACCAGATACACTGCAACAAGCCAAAAAGgtttggtttt ... ggttttgtagATTGATGAGGAGATTCTTCAGGAAGTGGT
EST: gi|193558860|gb|FK516625.1|FK516625
EST:     CGTTATTTAGCAGTGCCACCACCAGATACACTGCAACAAGACCAAAAAAG                         ATTGATGAGGAGATTCTTCAGGAAGTGGTTAATATGGGATTTGACAGGAA
genomic: CGTTATTTAGCAGTGCCACCACCAGATACACTGCAACAAG-CCAAAAA-Ggtttggtttt ... ggttttgtagATTGATGAGGAGATTCTTCAGGAAGTGGTTAATATGGGATTTGACAGGAA
EST: gi|193727656|gb|FK664496.1|FK664496
EST:     CACCACCAGATACACTGCAACAAGCCAAAAAG                         ATTGATGAGGAGATTCTTCAGGAAGTGGTTAATNTGGGATTTGACAGGAAT
genomic: CACCACCAGATACACTGCAACAAGCCAAAAAGgtttggtttt ... ggttttgtagATTGATGAGGAGATTCTTCAGGAAGTGGTTAATATGGGATTTGACAGGAAT
EST: gi|193621277|gb|FK566803.1|FK566803
EST:     CGCGTTATTTAGCAGTGCCACCACCAGATACACTGCAACAAGCCAAAAAG                         ATTGATGAGGAGATTCTTCAGGAAGTGGTTAATATGGGATTTGACAGGAAT
genomic: CGCGTTATTTAGCAGTGCCACCACCAGATACACTGCAACAAGCCAAAAAGgtttggtttt ... ggttttgtagATTGATGAGGAGATTCTTCAGGAAGTGGTTAATATGGGATTTGACAGGAAT