Sequence
atgc intronic sequence ATGC exonic sequenceCTTCCTGATTATCATGATGTGATCGAGCATCCCATGGACTTTGCCACTGTGAGGAAGAAGTTGGGAAATGGATCTTATACTACCTTAGAACAATTTGAGgtatgcaaacttgatatacttacgatgctcagacttgagagctgagactcaaaatgtgggttgttagcaagactcagccaaatgtagttagtactgagca...
Basic information
species | Glycine max |
transcript | GLYMA13G05000.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G05000.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G044044_T01 (Zea mays), 5'ss of exon 5
CTTCCTGATTATCATGATGTGATCGAGCATCCCATGGACTTTGCCACTGTGAGGAAGAAGTTGGGAAATGGATCTTATACTACCTTAGAACAATTTGAGgt-atgcaaacttgatatacttacgatgctcagacttgagagctgagactcaaaatgtgggttgttagcaagactcagcca-aatgtagttagtactgagca---
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CTGCCTGATTATCATGATGTGATTGAGCACCCAATGGACTTCGGCACCGTCAGGAAGAAGCTTGCCAGGAATGCATATCGCTCGTTTGAGCAATTTGAGgtcagattgataggctttggtcat-atatttagg-tagcgaatggataatgaaatatcatgttgtgatttg---ttggccatggaatagttacctttcagttcat
upper sequence: GLYMA13G05000.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G55040.2 (Arabidopsis thaliana), 5'ss of exon 5
CTTCCTGATTATCATGATGTGATCGAGCATCCCATGGACTTTGCCACTGTGAGGAAGAAGTTGGGAAATGGATCTTATACTACCTTAGAACAATTTGAGgtatgcaaacttgatatacttacgatgctcagacttgagagctgagactcaaaatg-tgggttgttagcaagactcagccaaatgtagttagtactgagca-------
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CTTCCTGATTATCATGATATGATAGAGCATCCCATGGATTTTTCCACAGTGAGGAAGAAGCTTGCGAATGGATCATATTCTACGTTGGAAGAGCTCGAGgtggg------tgataagtttgt--tactcaagtttacatggagagcttttacatgatgaactgattttgtagcttttcaggatatggcttctctgtagaataatggg
upper sequence: GLYMA13G05000.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv19s0090g00610.t01 (Vitis vinifera), 5'ss of exon 5
CTTCCTGATTATCATGATGTGATCGAGCATCCCATGGACTTTGCCACTGTGAGGAAGAAGTTGGGAAATGGATCTTATACTACCTTAGAACAATTTGAGgtatgca-aacttg-atatactta---cgatgctcagacttgagagctgagactcaaaatgtgggttgttagcaagactcagccaaatgtagttagtactgagca
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CTGCCTGATTATCATGATGTGATTGAGCATCCAATGGACTTCGCGACAGTGAGGAAGAAACTTGGGAATGGGTCATATCGTACCTTTGAGGAATTTGAGgtaactataacttgcatttgcttcatttaatgcacctgttttggt-ctaaga---gatatgtgatttcttctttatgttggagatgagttggattgtgatgttc-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|207694744|gb|GD677919.1|GD677919EST: TGAGGAAGAAGTTGGGAAATGGATCTTATACTACCTTAGAACAATTTGAG ATTGATGTCTTTTTAATTTGCTCAAATGCAATGCAATACAATGCACCAGAG
genomic: TGAGGAAGAAGTTGGGAAATGGATCTTATACTACCTTAGAACAATTTGAGgtatgcaaac ... ttgaatgcagATTGATGTCTTTTTAATTTGCTCAAATGCAATGCAATACAATGCACCAGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTTCCTGATTATCATGATGTGATCGAGCATCCCATGGACTTTGCCACTGTGAGGAAGAAGTTGGGAAATGGATCTTATACTACCTTAGAACAATTTGAGgtatgcaaacttgatatacttacgatgctcagacttgagagctgagactcaaaatgtgggttgttagcaagactcagccaaatgtagttagtactgagca
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT