Sequence
atgc intronic sequence ATGC exonic sequenceCCATGGATAGCATCTGTAGCAGCTGCAATTGATGATCGTAGATATAAAAATCATTTGATCCTTGGAAATGGAAAAACCTTAGCTGGAATTGGGTTATCACgtgagttttccaacttctgactatatttcttcagatatattgttttttttaatggattggcattgagacttgggagatataatgtggaatattttggaaa...
Basic information
species | Glycine max |
transcript | GLYMA13G00580.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G00580.1 (Glycine max), 5'ss of exon 6
lower sequence: AT4G30020.1 (Arabidopsis thaliana), 5'ss of exon 7
CCATGGATAGCATCTGTAGCAGCTGCAATTGATGATCGTAGATATAAAAATCATTTGATCCTTGGAAATGGAAAAACCTTAGCTGGAATTGGGTTATCACgtgagttt-tccaacttctgac-----tatatttcttcagata-tattgttttttttaatggattggcattgagac-ttgggagatataatgtggaatattttggaaa-------------------
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CCTTGGATAACTACTGTGGCTGCTGCAATTGATGATCGCAGATACAAAAATCATCTGACTCTTGGAAATGGTAAAATGCTTGCCGGAATAGGATTATCTCgtaagtttctcctttctctgatctagatatgtagatccacacaatagtaatttatttaagaagagactgttagtttattctgagtctctctattggttttttgatgaatcattatgcgtttgtgcag
upper sequence: GLYMA13G00580.1 (Glycine max), 5'ss of exon 6
lower sequence: AT2G19170.1 (Arabidopsis thaliana), 5'ss of exon 7
CCATGGATAGCATCTGTAGCAGCTGCAATTGATGATCGTAGATATAAAAATCATTTGATCCTTGGAAATGGAAAAACCTTAGCTGGAATTGGGTTATCACgtgagttttccaacttctgactatatttcttcagatatattgttttttttaatggattggcattgagacttgggagatataatgtggaatattttggaaa-
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CCCTGGATAACTACTGTCGCCGCTGCAATTGATGATCGAAGATACAAAAATCATCTGACCCTTGGGAATGGAAAAATGCTTGCAGGGATGGGCTTATCTCgtaagt-----aaa----aagaatgttattttacatttggcatgaccgata-cgagtttatattttcatgtttttgatgaattgttacgtattttctgcag
upper sequence: GLYMA13G00580.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv11s0103g00550.t01 (Vitis vinifera), 5'ss of exon 7
CCATGGATAGCATCTGTAGCAGCTGCAATTGATGATCGTAGATATAAAAATCATTTGATCCTTGGAAATGGAAAAACCTTAGCTGGAATTGGGTTATCACgtgagttttccaacttctgactatatttcttcagatatattgttttttttaatggattggcattgagacttggga-gatataatgtggaatattttggaaa---------
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CCGTGGATTGCATCTGTAGCTGCAGCAATCGATGATCGTAGATACAAAAACCATCTTACTTTGGGAAATGGGAAAATCTTACCTGGAATTGGTTTGTCACgtaagttctatataacctga----attatgttgga---attctactgttta---ggttggccttgggaaacaatatgattcaatctgctgaatactggagttcaatcacaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|17519758|gb|BM188800.1|BM188800EST: TCATTTGATCCTTGGAAATGGAAAAACCTTAGCTGGAATTGGGTTATCAC CTTCCACGCATTTAAACGAAACATACACATTGGTTGCCGCAAATGATGTGT
genomic: TCATTTGATCCTTGGAAATGGAAAAACCTTAGCTGGAATTGGGTTATCACgtgagttttc ... acttgtacagCTTCCACGCATTTAAACGAAACATACACATTGGTTGCCGCAAATGATGTGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCATGGATAGCATCTGTAGCAGCTGCAATTGATGATCGTAGATATAAAAATCATTTGATCCTTGGAAATGGAAAAACCTTAGCTGGAATTGGGTTATCACgtgagttttccaacttctgactatatttcttcagatatattgttttttttaatggattggcattgagacttgggagatataatgtggaatattttggaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA