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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCACCATTTTTTAGGCATGACACTAGGTTGCGTGCTCTACGCTTCCTTGATCACATGCTTgtaagatttttctagtttagccttttagcattacgaaatgttaacatgcaaattttagagttgaagttcttgatgatgtgtcttcctttccttcag

Basic information

species Glycine max
transcript GLYMA12G37070.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G37070.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G22870.1 (Arabidopsis thaliana), 5'ss of exon 6
GCTCACCATTTTTTAGGCATGACACTAGGTTGCGTGCTCTACGCTTCCTTGATCACATGCTTgtaagatttttctagtttagccttttagcattacgaaatgttaacatgcaaattttagagttg-aagttcttgatgatgtgtcttcctttccttcag
| ||    |||||  |    ||||||||||||||||| || || ||||||||||| ||||||||| |  | ||  | ||||  | |        || | | || |   ||  | ||  | |  |  ||   |||   |   | | ||  |||  | |||
GATCTAGTTTTTTCCGAAGCGACACTAGGTTGCGTGCCCTCCGTTTCCTTGATCATATGCTTgtatgtatattaaattttaatcatcgtttcagac-agacgtgattttgatagttggaaacatataaaacctttggggcatttttttatttattgcag

upper sequence: GLYMA12G37070.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G71410.1 (Arabidopsis thaliana), 5'ss of exon 6
GCTCACCATTTTTTAGGCATGACACTAGGTTGCGTGCTCTACGCTTCCTTGATCACATGCTTgtaag-----atttttctagt-------ttagcc-------ttttagcattacgaaatgttaacatgcaaatttt-agagttgaagttcttgatgatgtg-tcttcctttccttcag
| ||    |||||  |   |||| ||||||| |||||||| ||||||||||||||  |||||||| |     ||  ||| | |       | || |       | |||| | |   | ||| |   |     || |  | | ||||    |||   |      | |||  ||  | |||
GATCGAATTTTTTCCGAAGTGACGCTAGGTTACGTGCTCTCCGCTTCCTTGATCATTTGCTTgtacgtgtatatgcttccaataattgtttcagacagactgttcttagaagtcttagatgatggaaaatgtatctccacatttgataaccttttcggaacaattttctctttatccag

upper sequence: GLYMA12G37070.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv18s0089g00030.t01 (Vitis vinifera), 5'ss of exon 6
GCTCACCATTTTTTAGGCATGACACTAGGTTGCGTGCTCTACGCTTCCTTGATCACATGCTTgtaaga-------tttttctagtt-----tagccttt----tagcattacgaaatgttaacatgca----------aattttagagttgaagt--------tcttgatgatgtgtcttcctttccttcag
| || ||||||||| |  |||||||||||||||||||||| |||||| | || |||||||||||| ||       ||| | | | |       || |||    ||  ||||| |||    |   ||||          || |    |||||  |         |||   | |    | ||  |||  | |||
GTTCTCCATTTTTTCGAGATGACACTAGGTTGCGTGCTCTTCGCTTCTTGGACCACATGCTTgtatgaagttatatttctttggatgtcacctgcttttgacataagattactaaaaaacattgtgcatgagaaggaaaaataagaagttggtggcaatggaatctgagtaacaaattttatttttttgcag