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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGTTCCTCCTGTAATCCATCGAGATATCAAATCTTCTAACATTCTCTTGGACCAGTCCATGCGAGCCAGGgtatgtctttgctactcatcacctttataacaaaaaagtagtttgtaaaagagaaaaggaaggttaggttaaatatgtttttactccctataaatatagc...

Basic information

species Glycine max
transcript GLYMA12G34410.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G34410.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G54590.2 (Arabidopsis thaliana), 5'ss of exon 5
GCAGTTCCTCCTGTAATCCATCGAGATATCAAATCTTCTAACATTCTCTTGGACCAGTCCATGCGAGCCAGGgtatgtctttgctactcatcacctttataacaaaaaagtagtttgtaaaagagaaaaggaaggttaggttaaatatgtttttactccctataaatatagc
|| |||||||||||||||||  |||||||||||||||| |||||  |  |||| || || ||| ||||  |||||    | |    ||  |  |  ||      |||    ||| | |  ||              ||      || |  ||| ||| |             
GCTGTTCCTCCTGTAATCCACAGAGATATCAAATCTTCCAACATCTTGCTGGATCAATCTATGAGAGCTCGGgtaaacatat----cttctttctctt----tgaaatctcagtctattgaaccacctcaagtttctaatggtgatcttctttaacttcag-----------

upper sequence: GLYMA12G34410.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G54590.1 (Arabidopsis thaliana), 5'ss of exon 5
----------------------------GCAGTTCCTCCTGTAATCCATCGAGATATCAAATCTTCTAACATTCTCTTGGACCAGTCCATGCGAGCCAGGgtatgtctttgctactcatcacctttataacaaaaaagtagtttgtaaaagagaaaaggaaggttaggttaaatatgtttttactccctataaatatagc
                            || |||||||||||||||||  |||||||||||||||| |||||  |  |||| || || ||| ||||  |||||    | |    ||  |  |  ||      |||    ||| | |  ||              ||      || |  ||| ||| |             
AAACTCATGTTCTAATCAATTGTTCCAGGCTGTTCCTCCTGTAATCCACAGAGATATCAAATCTTCCAACATCTTGCTGGATCAATCTATGAGAGCTCGGgtaaacatat----cttctttctctt----tgaaatctcagtctattgaaccacctcaagtttctaatggtgatcttctttaacttcag-----------

upper sequence: GLYMA12G34410.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv19s0014g04960.t01 (Vitis vinifera), 5'ss of exon 5
GCAGTTCCTCCTGTAATCCATCGAGATATCAAATCTTCTAACATTCTCTTGGACCAGTCCATGCGAGCCAGGgtatgtctttgctactcatcacctttataacaaaaaagtagtttgtaaaagagaaaaggaaggt-taggttaaatatgtt--tttactccctataaatatagc
|| ||||||||||| || || || || |||||||| || || ||||| ||||||||||||||| |||| |||||||| ||    |  |  |    ||| |     |    |  || | || | ||| | |  | |  || |  ||| |   |  ||||| || |||   |  |  
GCTGTTCCTCCTGTCATACACCGGGACATCAAATCATCCAATATTCTATTGGACCAGTCCATGAGAGCAAGGgtatgcctcaatttttatttttatttgttttttat---ttcttagaaagaaagacatgataagcataagaaaaaaaaaatgatttacaccatatttgtccatg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192295197|gb|FG986916.1|FG986916
EST:     GAGATATCAAATCTTCTAACATTCTCTTGGACCAGTCCATGCGAGCCAGG                         GTCACCGATTTTGGACTCTCAAGAGAAGAGATGGTGGATAAACATGCTGCA
genomic: GAGATATCAAATCTTCTAACATTCTCTTGGACCAGTCCATGCGAGCCAGGgtatgtcttt ... aatcaaacagGTCGCCGATTTTGGACTCTCAAGAGAAGAGATGGTGGATAAACATGCTGCA