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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACCCCTTGTATTACGGACTGTGTGATGGCAGAACTCGAGAAATTAGGGCAAAAATATCGTGTAGCTCTAAGgtagatgtcatgttttcttgtcttttgattattattggtttatattttcatacatttgagatttacatataaaaaggatgacccaatgcatgatggggct...

Basic information

species Glycine max
transcript GLYMA12G31740.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G31740.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G26530.1 (Arabidopsis thaliana), 5'ss of exon 5
GCACCCCTTGTATTACGGACTGTGTGATGGCAGAACTCGAGAAATTAGGGCAAAAATATCGTGTAGCTCTAAGgtagatgtcatgttttcttgtcttttgattattattggtttatattttcatacatttgagatttacatataaaaaggatgacccaatgcatgatggggct
|||| |||||||||||||||||||| ||||| || || ||||| ||||| || || |||||||||||||| ||||| |         || ||| |||   |  |   ||  |   ||   |  ||   ||    |  |  | | || | | |      ||   || |  |   
GCACTCCTTGTATTACGGACTgtgtcatggctgagctggagaagttaggtcagaagtatcgtgtagctctgaggtaaag-------ctttttgacttcaaagaagagtttttcagtagaattgtatcatttttgtcgat-tcttaataagttacttttatatttggttag---

upper sequence: GLYMA12G31740.1 (Glycine max), 5'ss of exon 6
lower sequence: AT2G46230.2 (Arabidopsis thaliana), 5'ss of exon 5
GCACCCCTTGTATTACGGACTGTGTGATGGCAGAACTCGAGAAATTAGGGCAAAAATATCGTGTAGCTCTAAGgtagatgtcatgttttcttgtcttttgattattattggtttatattttcatacatttgagatttacatataaaaaggatgacccaatgcatgatggggct
|||| |||||||| ||||| ||||| ||||| ||  | ||||| ||||| || || |||||||||||||||||||| || |  |    | ||       |  | || |  ||||||  |||  |   || | |  ||     |||   |  |     |||   || | |    
GCACTCCTTGTATCACGGATTGTGTCATGGCTGAGTTAGAGAAGTTAGGTCAGAAGTATCGTGTAGCTCTAAGgtaaatcttttagactttttgaacaaggcttttct--gtttatggttttgt---ttcgtggatt---cgtaattggtttactataatatttggtag----

upper sequence: GLYMA12G31740.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv15s0046g02690.t01 (Vitis vinifera), 5'ss of exon 5
GCACCCCTTGTATTACGGACTGTGTGATGGCAGAACTCGAGAAATTAGGGCAAAAATATCGTGTAGCTCTAAGgtagatgt-catgttttcttgtc-------ttttgattattattggttt-atattttcatacatttgagatttacatataaaaaggatgacccaatgcatgatggggct
|||| |||||||| ||||| |||||||||||||| || ||||| ||||| || ||||| || || ||||| ||||| || | ||| | || |  ||       || ||||| | | | ||||     |   || || |    |  ||  | | |  |   | |||| ||  |          
GCACTCCTTGTATCACGGATTGTGTGATGGCAGAGCTTGAGAAGTTAGGTCAGAAATACCGCGTGGCTCTGAGgtaaattttcatttgttttactcaatgaaattgtgattttcagtagttttgccctactattcactgagaaaatatttttgatgattctcaccctattaag---------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192330947|gb|FK021660.1|FK021660
EST:     GTGATGGCAGAACTCGAGAAATTAGGGCAAAAATATCGTGTAGCTCTAAG                         GATTGCCAAGGATCCTCGATTTGAGAGAATACTATGTACTCATAAAGGGAC
genomic: GTGATGGCAGAACTCGAGAAATTAGGGCAAAAATATCGTGTAGCTCTAAGgtagatgtca ... tacataacagGATTGCCAAGGATCCTCGATTTGAGAGAATACTATGTACTCATAAAGGGAC
EST: gi|192306233|gb|FG996847.1|FG996847
EST:     GTGATGGCAGAACTCGAGAAATTAGGGCAAAAATATCGTGTAGCTCTAAG                         GATTGCCAAGGATCCTCGATTTGAGAGAATACTATGTACTCATAAAGGGAC
genomic: GTGATGGCAGAACTCGAGAAATTAGGGCAAAAATATCGTGTAGCTCTAAGgtagatgtca ... tacataacagGATTGCCAAGGATCCTCGATTTGAGAGAATACTATGTACTCATAAAGGGAC
EST: gi|192330326|gb|FK019876.1|FK019876
EST:     GTGATGGCAGAACTCGAGAAATTAGGGCAAAAATATCGTGTAGCTCTAAG                         GATTGCCAAGGATCCTCGATTTGAGAGAATACTATGTACTCATAAAGGGAC
genomic: GTGATGGCAGAACTCGAGAAATTAGGGCAAAAATATCGTGTAGCTCTAAGgtagatgtca ... tacataacagGATTGCCAAGGATCCTCGATTTGAGAGAATACTATGTACTCATAAAGGGAC
EST: gi|21676190|gb|BQ628541.1|BQ628541
EST:     AAAATATCGTGTAGCTCTAAG                         GATTGCCAAGGATCCTCGATTTGAGAGAATACTATGTACTCATAAAGGGAC
genomic: AAAATATCGTGTAGCTCTAAGgtagatgtca ... tacataacagGATTGCCAAGGATCCTCGATTTGAGAGAATACTATGTACTCATAAAGGGAC
EST: gi|10233586|gb|BE802474.1|BE802474
EST:     GTGATGGCAGAACTCGAGAAATTAGGGCAAAAATATCGTGTAGCTCTAAG                         GATTGCCAAGGATCCTCGATGTGAGAGAATACTATGTACTCATAAAGGGAC
genomic: GTGATGGCAGAACTCGAGAAATTAGGGCAAAAATATCGTGTAGCTCTAAGgtagatgtca ... tacataacagGATTGCCAAGGATCCTCGATTTGAGAGAATACTATGTACTCATAAAGGGAC
EST: gi|151411977|gb|EV281788.1|EV281788
EST:     GTGATGGCAGAACTCGAGAAATTAGGGCAAAAATATCGTGTAGCTCTAAG                         GATTGCCAAGGATCCTCGATTTGAGAGAATACTATGTACTCATAAAGGGAC
genomic: GTGATGGCAGAACTCGAGAAATTAGGGCAAAAATATCGTGTAGCTCTAAGgtagatgtca ... tacataacagGATTGCCAAGGATCCTCGATTTGAGAGAATACTATGTACTCATAAAGGGAC
EST: gi|192328346|gb|FK020057.1|FK020057
EST:     GTGATGGCAGAACTCGAGAAATTAGGGCAAAAATATCGTGTAGCTCTAAG                         GATTGCCAAGGATCCTCGATTTGAGAGAATACTATGTACTCATAAAGGGAC
genomic: GTGATGGCAGAACTCGAGAAATTAGGGCAAAAATATCGTGTAGCTCTAAGgtagatgtca ... tacataacagGATTGCCAAGGATCCTCGATTTGAGAGAATACTATGTACTCATAAAGGGAC
EST: gi|13790864|gb|BG653455.1|BG653455
EST:     GTGATGGCAGAACTCGAGAAATTAGGGCAAAAATATCGTGTAGCTCTAAA                         GATTGCCAAGGATCCTCGATTTGAGAGAATACTATGTACTCATAAA
genomic: GTGATGGCAGAACTCGAGAAATTAGGGCAAAAATATCGTGTAGCTCTAAGgtagatgtca ... tacataacagGATTGCCAAGGATCCTCGATTTGAGAGAATACTATGTACTCATAAA
EST: gi|151407416|gb|EV277231.1|EV277231
EST:     GTGATGGCAGAACTCGAGAAATTAGGCCAAAAATATCGTGTAGCTCTAAG                         GATTGCCAAGGATCCTCGATTTGAGAGAATACTATGTACTCATAAAGGGAC
genomic: GTGATGGCAGAACTCGAGAAATTAGGGCAAAAATATCGTGTAGCTCTAAGgtagatgtca ... tacataacagGATTGCCAAGGATCCTCGATTTGAGAGAATACTATGTACTCATAAAGGGAC
EST: gi|51345064|gb|CO985797.1|CO985797
EST:     GTGATGGCAGAACTCGAGAAATTAGGGCAAAAATATCGTGTAGCTCTAAG                         GATTGCCAAGGATCCTCGATTTGAGAGAATACTATGTACTCATAAAGGGAC
genomic: GTGATGGCAGAACTCGAGAAATTAGGGCAAAAATATCGTGTAGCTCTAAGgtagatgtca ... tacataacagGATTGCCAAGGATCCTCGATTTGAGAGAATACTATGTACTCATAAAGGGAC
EST: gi|24205709|gb|BU964962.1|BU964962
EST:     GTGATGGCAGAACTCGAGAAATTAGGGCAAAAATATCGTGTAGCTCTAAG                         GATTGCCAAGGATCCTCGATTTGAGAGAATACTATGTACTCATAAAGGGAC
genomic: GTGATGGCAGAACTCGAGAAATTAGGGCAAAAATATCGTGTAGCTCTAAGgtagatgtca ... tacataacagGATTGCCAAGGATCCTCGATTTGAGAGAATACTATGTACTCATAAAGGGAC
EST: gi|13790863|gb|BG653454.1|BG653454
EST:     GTGATGGCAGAACTCGAGAAATTAGGGCAAAAATATCGTGTAGCTCTAAG                         GATTGCCAAGGATCCTCGATTTGAGAGAATACTATGTACTCATAAAGGGAC
genomic: GTGATGGCAGAACTCGAGAAATTAGGGCAAAAATATCGTGTAGCTCTAAGgtagatgtca ... tacataacagGATTGCCAAGGATCCTCGATTTGAGAGAATACTATGTACTCATAAAGGGAC
EST: gi|298179193|gb|HO027664.1|HO027664
EST:     GTGATGGCAGAACTCGAGAAATTAGGGCAAAAATATCGTGTAGCTCTAAG                         GATTGCCAAGGATCCTCGATTTGAGAGAATACTATGTACTCATAAAGGGAC
genomic: GTGATGGCAGAACTCGAGAAATTAGGGCAAAAATATCGTGTAGCTCTAAGgtagatgtca ... tacataacagGATTGCCAAGGATCCTCGATTTGAGAGAATACTATGTACTCATAAAGGGAC
EST: gi|298183536|gb|HO028749.1|HO028749
EST:     GTGATGGCAGAACCCGAGAAATTAGGGCAAAAATATCGTGTAGCTCTAAG                         GATTGCCAAGGATCCTCGATTTGAGAGAATACTATGTACTCATAAA
genomic: GTGATGGCAGAACTCGAGAAATTAGGGCAAAAATATCGTGTAGCTCTAAGgtagatgtca ... tacataacagGATTGCCAAGGATCCTCGATTTGAGAGAATACTATGTACTCATAAA
EST: gi|298183933|gb|HO029146.1|HO029146
EST:     GTGATGGCAGAACTCGAGAAATTAGGGCAAAAATATCGTGTAGCTCTAAG                         GATTGCCAAGGATCCTCGATTTGAGAGAATACTATGTACTCATAAAGGGAC
genomic: GTGATGGCAGAACTCGAGAAATTAGGGCAAAAATATCGTGTAGCTCTAAGgtagatgtca ... tacataacagGATTGCCAAGGATCCTCGATTTGAGAGAATACTATGTACTCATAAAGGGAC
EST: gi|209717530|gb|BW679664.1|BW679664
EST:     GTGATGGCAGAACTCGAGAAATTAGGGCAAAAATATCGTGTAGCTCTAAG                         GATTGCCAAGGATCCTCGATTTGAGAGAATACTATGTACTCATAAAGGGAC
genomic: GTGATGGCAGAACTCGAGAAATTAGGGCAAAAATATCGTGTAGCTCTAAGgtagatgtca ... tacataacagGATTGCCAAGGATCCTCGATTTGAGAGAATACTATGTACTCATAAAGGGAC
EST: gi|151408961|gb|EV278769.1|EV278769
EST:     GTGATGGCAGAACTCGAGAAATTAGGGCAAAAATATCGTGTAGCTCTAAG                         GATTGCCAAGGATCCTCGATTTGAGAGAATACTATGTACTCATAAAGGGAC
genomic: GTGATGGCAGAACTCGAGAAATTAGGGCAAAAATATCGTGTAGCTCTAAGgtagatgtca ... tacataacagGATTGCCAAGGATCCTCGATTTGAGAGAATACTATGTACTCATAAAGGGAC