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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCATCTAGGAGATACTCCCCATAACTTGACTGAAAGCGATTTTGAATACTTGGCTAGCAGGACAGAGGGGTTTTCTGGTTCAGACATATCTGTCTGTgtaagttttacttctatatggaattactggtttcattaatcttatacttaatgaatcttaagtaaaaagtttttggacctcctcttcag

Basic information

species Glycine max
transcript GLYMA12G30910.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G30910.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv06s0080g00160.t01 (Vitis vinifera), 5'ss of exon 6
GTGCATCTAGGAGATACTCCCCATAACTTGACTGAAAGCGATTTTGAATACTTGGCTAGCAGGACAGAGGGGTTTTCTGGTTCAGACATATCTGTCTGTgtaagttttacttctatatggaattactggtttcattaatcttatacttaatgaatcttaagtaaaaagtttt----tggacctcctcttcag-------------------------------------------
|||||||| ||||||||||| || |||||||||||||| |||||||||  ||| |||   | |||||| ||||||||||||||||| ||  |||| |||||||||   | | ||||||   ||    | |    | |||  |    || |    || | ||||  | | |||    |||  |        ||                                           
GTGCATCTTGGAGATACTCCTCACAACTTGACTGAAAGTGATTTTGAAAGCTTAGCTCAGAAGACAGAAGGGTTTTCTGGTTCAGATATTGCTGTTTGTgtaagtgcgagtgctatatcagat----gctcaactaaattctccctttgagctttcctcagtagtatggtttaaggtgggacagaatagtagaaaatagcttatcatcttgctttttttggtgtaccctttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16104773|gb|BI892513.1|BI892513
EST:     ACTTGGCTAGCAGGACAGAGGGGTTTTCTGGTTCAGACATATCTGTCTGT                         GTAAAGGATGTGTTATTTGAACCTGTTCGCAAAACCCAAGATGCAATGTTC
genomic: ACTTGGCTAGCAGGACAGAGGGGTTTTCTGGTTCAGACATATCTGTCTGTgtaagtttta ... tcctcttcagGTAAAGGATGTGTTATTTGAACCTGTTCGCAAAACCCAAGATGCAATGTTC
EST: gi|208067302|gb|GD866916.1|GD866916
EST:     ACTTGGCTAGCAGGACAGAGGGGTTTTCTGGTTCAGACATATCTGTCTGT                         GTAAAGGATGTGTTATTTGAACCTGTTCGCAAAACCCAAGATGCAATGTTC
genomic: ACTTGGCTAGCAGGACAGAGGGGTTTTCTGGTTCAGACATATCTGTCTGTgtaagtttta ... tcctcttcagGTAAAGGATGTGTTATTTGAACCTGTTCGCAAAACCCAAGATGCAATGTTC
EST: gi|207762929|gb|GD733874.1|GD733874
EST:     ACTTGGCTAGCAGGACAGAGGGGTTTTCTGGTTCAGACATATCTGTCTGT                         GTAAAGGATGTGTTATTTGAACCTGTTCGCAAAACCCAAGATGCAATGTTC
genomic: ACTTGGCTAGCAGGACAGAGGGGTTTTCTGGTTCAGACATATCTGTCTGTgtaagtttta ... tcctcttcagGTAAAGGATGTGTTATTTGAACCTGTTCGCAAAACCCAAGATGCAATGTTC
EST: gi|193479837|gb|FK447198.1|FK447198
EST:     ACTTGGCTAGCAGGACAGAGGGGTTTTCTGGTTCAGACATATCTGTCTGT                         GTAAAGGATGTGTTATTTGAACCTGTTCGCAAAACCCAAGATGCAATGTTC
genomic: ACTTGGCTAGCAGGACAGAGGGGTTTTCTGGTTCAGACATATCTGTCTGTgtaagtttta ... tcctcttcagGTAAAGGATGTGTTATTTGAACCTGTTCGCAAAACCCAAGATGCAATGTTC
EST: gi|207788052|gb|GD760156.1|GD760156
EST:     ACTTGGCTAGCAGGACAGAGGGGTTTTCTGGTTCAGACATATCTGTCTGT                         GTAAAGGATGTGTTATTTGAACCTGTTCGCAAAACCCAAGATGCAATGTTC
genomic: ACTTGGCTAGCAGGACAGAGGGGTTTTCTGGTTCAGACATATCTGTCTGTgtaagtttta ... tcctcttcagGTAAAGGATGTGTTATTTGAACCTGTTCGCAAAACCCAAGATGCAATGTTC
EST: gi|22931002|gb|BU548141.1|BU548141
EST:     ACTTGGCTAGCAGGACAGAGGGGTTTTCTGGTTCAGACATATCTGTCTGT                         GTAAAGGATGTGTTATTTGAACCTGTTCGCAAAACCCAAGATGCAATGTTC
genomic: ACTTGGCTAGCAGGACAGAGGGGTTTTCTGGTTCAGACATATCTGTCTGTgtaagtttta ... tcctcttcagGTAAAGGATGTGTTATTTGAACCTGTTCGCAAAACCCAAGATGCAATGTTC
EST: gi|254331393|gb|GR843405.1|GR843405
EST:     AC-TGGCTAGCAGGACAGA-GGG-TTTCTGGTTCAGACATATCTGTCTGT                         GTAAAGGATGTGTTATTTGAACCTGTTCGCAAAACCCAAGATGCAATGTTC
genomic: ACTTGGCTAGCAGGACAGAGGGGTTTTCTGGTTCAGACATATCTGTCTGTgtaagtttta ... tcctcttcagGTAAAGGATGTGTTATTTGAACCTGTTCGCAAAACCCAAGATGCAATGTTC