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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCTTTGGACATGACATATTCTGTCAAATGGTCTCCTACGAATGTCACTTTTGGACGCCGATTTGATGTATACCTGGACTATCCGTTCTTTGAGCATCAGgtgaaaatcattgctgctagatttgtattttagattgaagaggtgtttattgttggttacctgctacgtgttcattcatgtggatcctatcttagccatgtcactgagcgaactttgatcatttttctttctgtag

Basic information

species Glycine max
transcript GLYMA12G29120.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G29120.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os12g07670.1 (Oryza sativa), 5'ss of exon 6
ACCTTTGGACATGACATATTCTGTCAAATGGTCTCCTACGAATGTCACTTTTGGACGCCGATTTGATGTATACCTGGACTATCCGTTCTTTGAGCATCAGgtgaaaatcattgctgctagatttgtattttagattgaagaggtgtttattgttggttacctgctacgtgttcattcatgtg-----gatcctatcttagccatgtcactgagcgaactttgatcatttt--tctttctgtag--------------------------------------------
    ||||||||||||||||| || || ||||  |  ||  |||| || |||| |||||| ||||| ||||||||||| ||||| ||||||||||| ||||| | | |  || |  ||  |          |||   || |  | |   |     |   |   |  | || | | | |||||     ||    || |||    |  ||    |   |  |  ||| | ||  ||||| || |                                             
GAAATTGGACATGACATATTCAGTGAAGTGGTTACAAACAGATGTGACCTTTGCACGCCGCTTTGAAGTATACCTGGATTATCCTTTCTTTGAGCACCAGgtaatatt--ttcccactccaa---------agaaaaaaaaactatgcgtaacatgcagctctcagcttgcttacttatgtgaaagagaaaaaatgttaattgtaacaacagg--gagctgaatcgtcttgttctttttgaaagttgttcaaaggttctgacttctatgcaaatttctaatgttcag

upper sequence: GLYMA12G29120.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os02g34690.1 (Oryza sativa), 5'ss of exon 6
ACCTTTGGACATGACATATTCTGTCAAATGGTCTCCTACGAATGTCACTTTTGGACGCCGATTTGATGTATACCTGGACTATCCGTTCTTTGAGCATCAGgtgaaaa-----tcattgctgctagatttgtattttagattgaaga---ggtgtttattgttggttacctgctacgtgttcattcatg--tggatcctatcttagccatgt------cactgagcgaactttgatca----tttttctttctgtag---
  | ||||| ||||||||||||||||| |||   || || ||||| || ||||  | ||| |||||||||||||| ||||| || |||||||| || ||||| | ||     |   |||   || |      || |  |     |      ||| | ||||||   |  | | || |    | | |||  | ||| ||   ||  ||||||        | |      || ||| ||    |  | | || | | |   
GGCATTGGATATGACATATTCTGTCAAGTGGGAACCAACCAATGTAACATTTGCTCACCGCTTTGATGTATACCTTGACTACCCTTTCTTTGAACACCAGgtaagaactcagtttctgcaattaaagcctggttctgcaccttggttcttatgtattttgttgccaattttccacataaaaaattatgccttgattctcaatttcccatgtatatcttgcagcatttcctctgaccacagataatccattttatggcag

upper sequence: GLYMA12G29120.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G026231_T01 (Zea mays), 5'ss of exon 6
ACCTTTGGACATGACATATTCTGTCAAATGGTCTCCTACGAATGTCACTTTTGGACGCCGATTTGATGTATACCTGGACTATCCGTTCTTTGAGCATCAGgtgaaaatcattgctgctagatttgtattttagattgaagaggtgtttattgttggttacctgctacgtgttcattcatgtggatcctatcttagccatgtcactgagcgaactttgatcatttttctt-tctgtag
     |||| ||||||||||| || || |||    | ||  ||||  | |||| |||||| ||||| || |||||||||||||| |||||||| || ||||||| | |  ||| |   |||            |    | |  |  |  ||  |  | | ||| ||  |   | || |  |     ||||  |||  ||   |       | || || |||| |||||  | |  ||
GAAACTGGAAATGACATATTCAGTGAAGTGGGTAGCAACAGATGTGTCATTTGCACGCCGTTTTGAAGTGTACCTGGACTATCCTTTCTTTGAACACCAGgtgatact--ttgtttgcagac----------aaccagaaactttctagtttctattcagctg-tatcttcccttttaactaa---ctat--tagaaatccta-------agctctgttcatatttctcattttcag

upper sequence: GLYMA12G29120.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G420310_T01 (Zea mays), 5'ss of exon 6
ACCTTTGGACATGACATATTCTGTCAAATGGTCTCCTACGAATGTCACTTTTGGACGCCGATTTGATGTATACCTGGACTATCCGTTCTTTGAGCATCAGgtgaaaatcattgctgctagatttgtattttagattgaagaggtgtttattgttggttacctgctacgtgttcattcatgtggatcctatcttagccatgtcactgagcgaactttgatcatttttctt-tctgtag
    ||||| ||||||||||| || || |||    | ||  ||||  | |||| |||||| ||||| || |||||||||||||| |||||||| || ||||||| | |  ||| |  ||||            |  ||  |  |  |  ||  || | | ||| ||| |   | || |  | |   ||||  |||  | ||| || |||    | || |||| |||||  | |  ||
GAAATTGGAAATGACATATTCAGTGAAGTGGGTAGCGACTGATGTGTCATTTGCACGCCGTTTTGAAGTGTACCTGGACTATCCTTTCTTTGAACACCAGgtgatact--ttgtttgtagac----------aaccgacaacttcctagtttctgttcagctg-taccttcccttttaactag---ctat--tag--aagtc-ctaagc----tctgttcatatttctcatttccag

upper sequence: GLYMA12G29120.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G10950.1 (Arabidopsis thaliana), 5'ss of exon 6
ACCTTTGGACATGACATATTCTGTCAAATGGTCTCCTACGAATGTCACTTTTGGACGCCGATTTGATGTATACCTGGACTATCCGTTCTTTGAGCATCAGgtgaaaatcattgctgcta--gatttgtattttagattgaagaggtgtttattgttggttacctgctacgtgttcattcatgtggatcctatcttagccatgtcactgagcgaactttgatcatttttctttctgtag
|    ||||| |||| ||||||||  |||||  ||| || |||||||| ||||  ||||| ||||| ||||| ||||| |||||||||||||| || ||||| |   | |    |||||   ||| || || ||   |   |       || |||  || |      | | ||||| |  | |  |   ||||  |   |   | |                                
AAAAATGGACCTGACGTATTCTGTGCAATGGATTCCAACAAATGTCACATTTGCTCGCCGCTTTGACGTATATCTGGATTATCCGTTCTTTGAACACCAGgtaacttttagca-tgctatgaattagtcttgtacccttctg------ctactgtctgtgattccaaatg-gttcactggtttataatgtatcacactgaatacccca------------------------------

upper sequence: GLYMA12G29120.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv12s0035g00280.t01 (Vitis vinifera), 5'ss of exon 6
ACCTTTGGACATGACATATTCTGTCAAATGGTCTCCTACGAATGTCACTTTTGGACGCCGATTTGATGTATACCTGGACTATCCGTTCTTTGAGCATCAGgtgaaaatcattgctgctagatttgtattttagattgaagaggtgtttattgttggttacctgctacgtgttcattcatgtggatcctatcttagccatgtcactgagcgaactttgatcatttttctttctgtag
| | || ||||||||||||||||| ||||||  |||||| | |||||||||||  || || |||||||| || ||||| || || |||||||| || ||||||||  || ||  || ||            | |||  | |  ||  ||  | |  |||  ||| || |  || |  |||    |||  |||||       || || |   |                        
AACATTAGACATGACATATTCTGTTAAATGGATTCCTACTACTGTCACTTTTGCTCGTCGTTTTGATGTTTATCTGGATTACCCTTTCTTTGAACACCAGgtgaatttc-ttattggta------ctcaccaaattagaaaaatgaatagggcta-ttagttgcaactt--tcttcaatgcacttccc-tcttaattgcccca-tgtgttta------------------------

upper sequence: GLYMA12G29120.1 (Glycine max), 5'ss of exon 6
lower sequence: EFJ15096 (Selaginella moellendorffii), 5'ss of exon 6
ACCTTTGGACATGACATATTCTGTCAAATGGTCTCCTACGAATGTCACTTTTGGACGCCGATTTGATGTATACCTGGACTATCCGTTCTTTGAGCATCAGgtgaaaatcattgctgctagatttgtattttagattgaagaggtgtttattgttggttacctgctacgtgttcattcatgtggatcctatcttagccatgtcactgagcgaactttgatcatttttctttctgtag
| |  ||||  | ||||| || || ||||||      || ||    | |||        |||||||||  |||||||||||||| |||||||||||||||||     |  ||| ||   | | | | |   || || ||    || || | ||    | | |||                                                                        
ATCCCTGGAGTTTACATACTCCGTGAAATGGATCGAGACAAACACGAGTTTCCACAAGAGATTTGATGCCTACCTGGACTATCCATTCTTTGAGCATCAGgt-----ttgttgttgtctg-tctttgtacaagtttaaactcctgcttgtggt-atcttcgtgcag----------------------------------------------------------------------

upper sequence: GLYMA12G29120.1 (Glycine max), 5'ss of exon 6
lower sequence: EFJ37593 (Selaginella moellendorffii), 5'ss of exon 6
ACCTTTGGACATGACATATTCTGTCAAATGGTCTCCTACGAATGTCACTTTTGGACGCCGATTTGATGTATACCTGGACTATCCGTTCTTTGAGCATCAGgtgaaaatcattgctgctagatttgtattttagattgaagaggtgtttattgttggttacctgctacgtgttcattcatgtggatcctatcttagccatgtcactgagcgaactttgatcatttttctttctgtag
| |  ||||  | ||||| || || ||||||      || ||    | |||        |||||||||  |||||||||||||| |||||||||||||||||     |  |||  |   | | | | |   || || ||    || || | ||    | | |||                                                                        
ATCCCTGGAGTTTACATACTCCGTGAAATGGATCGAGACAAACACGAGTTTCCACAAGAGATTTGATGCCTACCTGGACTATCCATTCTTTGAGCATCAGgt-----ttgttgtcgtctg-tctttgtacaagtttaaactcctgcttgtggt-atcttcgtgcag----------------------------------------------------------------------