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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACACTGTCGGGGATGAATCAGCTAATTTACCCTCAAACTTGGGCATTCACTCTAGTTGTAATTGTTTGTGTTCTTACCCAAATGAATTATTTAAATAAGgtacagtagtttttcttgttagttccctgaactttttatttatttgatgtactattatgtacttgtttttgtcaacactcaacaagttttgtaatgtact...

Basic information

species Glycine max
transcript GLYMA12G28940.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G28940.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv12s0035g00720.t01 (Vitis vinifera), 5'ss of exon 6
AACACTGTCGGGGATGAATCAGCTAATTTACCCTCAAACTTGGGCATTCACTCTAGTTGTAATTGTTTGTGTTCTTACCCAAATGAATTATTTAAATAAGgtacagtagtttttcttgttagttccctga-actttttatttatttgatgtactattatgtacttgtttttgtcaacactcaacaagttttgtaatgtact-
|||| | || || |||||||||||||  || ||||| || ||||| |||||| |||||||||||  ||||||  ||||||||||||| ||| |||| |||||| |||   | || |  ||| |    ||  | ||||| ||  ||| |  |  || |  | |||| ||||| |   |  ||  ||  ||||  ||  |  | 
AACATTATCAGGAATGAATCAGCTAACATATCCTCAGACATGGGCCTTCACTATAGTTGTAATTACTTGTGTAATTACCCAAATGAACTATCTAAACAAGgtagagtgcctcttttctttattattttgccattttttcttccttttacttcttact--gcacttctttttctgccctttcttcattttttacaacattgta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208319784|gb|GE116829.1|GE116829
EST:     CTCTAGTTGTAATTGTTTGTGTTCTTACCCAAATGAATTATTTAAATAAG                         GCACTGGATACTTTTAATACGGCAGTGGTATCTCCCATATATTATGTTATG
genomic: CTCTAGTTGTAATTGTTTGTGTTCTTACCCAAATGAATTATTTAAATAAGgtacagtagt ... ctgcaatcagGCACTGGATACTTTTAATACGGCAGTGGTATCTCCCATATATTATGTTATG
EST: gi|208130657|gb|GD932896.1|GD932896
EST:     TTGTAATTGTTTGTGTTCTTACCCAAATGAATTATTTAAATAAG                         GCACTGGATACTTTTAATACGGCAGTGGTATCTCCCATATATTATGTTATG
genomic: TTGTAATTGTTTGTGTTCTTACCCAAATGAATTATTTAAATAAGgtacagtagt ... ctgcaatcagGCACTGGATACTTTTAATACGGCAGTGGTATCTCCCATATATTATGTTATG
EST: gi|208147788|gb|GD951041.1|GD951041
EST:     CTCTAGTTGTAATTGTTTGTGTTCTTACCCAAATGAATTATTTAAATAAG                         GCACTGGATACTTTTA
genomic: CTCTAGTTGTAATTGTTTGTGTTCTTACCCAAATGAATTATTTAAATAAGgtacagtagt ... ctgcaatcagGCACTGGATACTTTTA
EST: gi|208186592|gb|GD982671.1|GD982671
EST:     CTCTAGTTGTAATTGTTTGTGTTCTTACCCAAATGAATTATTTAAATAAG                         GCACTGGATACTTTTAATACGGCAGTGGTATCTCCCATATATTATGTTATG
genomic: CTCTAGTTGTAATTGTTTGTGTTCTTACCCAAATGAATTATTTAAATAAGgtacagtagt ... ctgcaatcagGCACTGGATACTTTTAATACGGCAGTGGTATCTCCCATATATTATGTTATG
EST: gi|192333049|gb|FK024698.1|FK024698
EST:     ATTGTTTGTGTTCTTACCCAAATGAATTATTTAAATAAG                         GCACTGGATACTTTTAATACGGCAGTGGTATCTCCCATATATTATGTTATG
genomic: ATTGTTTGTGTTCTTACCCAAATGAATTATTTAAATAAGgtacagtagt ... ctgcaatcagGCACTGGATACTTTTAATACGGCAGTGGTATCTCCCATATATTATGTTATG
EST: gi|10236233|gb|BE805121.1|BE805121
EST:     CTCTAGTTGTAATTGTTTGTGTTCTTACCCAAATGAATTATTTAAATAAG                         GCACTGGATACTTTTAATACGGCAGTGGTATCTCCCATATATTATGTTATG
genomic: CTCTAGTTGTAATTGTTTGTGTTCTTACCCAAATGAATTATTTAAATAAGgtacagtagt ... ctgcaatcagGCACTGGATACTTTTAATACGGCAGTGGTATCTCCCATATATTATGTTATG