Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTGCAGGGCCCTTGCTTATATACATAACTGCATTGGTATATGTCATCGTGACATCAAACCTCAGAACCTACTTgtaagatatttctgagttaatgatttgtttgctatgtggaacttatttggtatagtcaatgtctcataatgcactcatttatgatattatttttatttag...

Basic information

species Glycine max
transcript GLYMA12G28730.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G28730.2 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G138676_T03 (Zea mays), 5'ss of exon 6
ATTTGCAGGGCCCTTGCTTATATACATAACTGCATTGGTATATGTCATCGTGACATCAAACCTCAGAACCTACTTgtaagatatttctgagttaatgatttgtt-tgctatgtggaacttatttggtatagtcaatgtctcataatgcactcatt--tatgatattatttttatttag
|| ||| | || |||||||||||||||||||||||||| || || || ||||| |||||||| |||||  | ||||| ||||||   |   ||  |  | | |  || | | ||   |||     ||||  |     | |  |       |  ||  |  |||  |||  | |     
ATATGCCGAGCGCTTGCTTATATACATAACTGCATTGGCATCTGCCACCGTGATATCAAACCGCAGAATGTTCTTgtgagatatgattttttttcttttctataatgatttttgttgctttacatgtatcattcgcatttgttggatgttttgttgctgggatggtatgataacg---

upper sequence: GLYMA12G28730.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv12s0035g01060.t01 (Vitis vinifera), 5'ss of exon 5
ATTTGCAGGGCCCTTGCTTATATACATAACTGCATTGGTATATGTCATCGTGACATCAAACCTCAGAACCTACTTgtaagatatttct-------gagttaatgatttgtttgctatgtggaacttatttggtatagtcaatgtctcataatgcactcatttatgatattatttttatttag
|| ||||| || ||||| ||||||||||| ||||||||||| ||||| ||||||||||| ||||||||| ||||||||||||  | |        ||||| | ||||||||   ||  |   || | ||  || ||     | | |  | ||| | |||| |   ||    |||||    | 
ATCTGCAGAGCGCTTGCGTATATACATAATTGCATTGGTATTTGTCACCGTGACATCAAGCCTCAGAACTTACTTgtaagattctcccttcttacgagttgaggatttgttacttacat---accttttcagtgtaac---tctatggtcatgaattcatgttgtatccatttttttgcca-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21678169|gb|BQ630520.1|BQ630520
EST:     ATAACTGCATTGGTATATGTCATCGTGACATCAAACCTCAGAACCTACTT                         GTGAACCCGCACACTCATCAGCTGAAACTATGTGATTTTGGGAGTGCAAAA
genomic: ATAACTGCATTGGTATATGTCATCGTGACATCAAACCTCAGAACCTACTTgtaagatatt ... ctcatgtcagGTGAACCCGCACACTCATCAGCTGAAACTATGTGATTTTGGGAGTGCAAAA
EST: gi|151408852|gb|EV278660.1|EV278660
EST:     ATAACTGCATTGGTATATGTCATCGTGACATCAAACCTCAGAACCTACTT                         GTGAACCCGCACACTCATCAGCTGAAACTATGTGATTTTGGGAGTGCAAAA
genomic: ATAACTGCATTGGTATATGTCATCGTGACATCAAACCTCAGAACCTACTTgtaagatatt ... ctcatgtcagGTGAACCCGCACACTCATCAGCTGAAACTATGTGATTTTGGGAGTGCAAAA
EST: gi|193630915|gb|FK585070.1|FK585070
EST:     TGTCATCGTGACATCAAACCTCAGAACCTACTT                         GTGAACCCACACACTCATCAGCTGAAACTATGTGATTTTGGGAGTGCAAAA
genomic: TGTCATCGTGACATCAAACCTCAGAACCTACTTgtaagatatt ... ctcatgtcagGTGAACCCGCACACTCATCAGCTGAAACTATGTGATTTTGGGAGTGCAAAA
EST: gi|151408377|gb|EV278185.1|EV278185
EST:     ATAACTGCATTGGTATATGTCATCGTGACATCAAACCTCAGAACCTACTT                         GTGAACCCGCACACTCATCAGCTGAAACTATGTGATTTTGGGAGTGCAAAA
genomic: ATAACTGCATTGGTATATGTCATCGTGACATCAAACCTCAGAACCTACTTgtaagatatt ... ctcatgtcagGTGAACCCGCACACTCATCAGCTGAAACTATGTGATTTTGGGAGTGCAAAA
EST: gi|193548282|gb|FK505275.1|FK505275
EST:     TAACTGCTATTGGTATATGTCATCGTGACATCAAACCTCAGAACCTACTT                         GTGAACCCGCACACTCATCAGCTGAAACTATGTGATTTTGGGAGTGCAAAA
genomic: TAACTGC-ATTGGTATATGTCATCGTGACATCAAACCTCAGAACCTACTTgtaagatatt ... ctcatgtcagGTGAACCCGCACACTCATCAGCTGAAACTATGTGATTTTGGGAGTGCAAAA
EST: gi|192295002|gb|FG986721.1|FG986721
EST:     ATAACTGCATTGGTATATGTCATCGTGACATCAAACCTCAGAACCTACTT                         GTGAACCCGCACACTCATCAGCTGAAACTATGTGATTTTGGGAGTGCAAAA
genomic: ATAACTGCATTGGTATATGTCATCGTGACATCAAACCTCAGAACCTACTTgtaagatatt ... ctcatgtcagGTGAACCCGCACACTCATCAGCTGAAACTATGTGATTTTGGGAGTGCAAAA
EST: gi|37995772|gb|CF807361.1|CF807361
EST:     ATAACTGCATTGGTATATGTCATCGTGACATCAAACCTCAGAACCTACTT                         GTGAACCCGCACACTCATCAGCTGAAACTATGTGATTTTGGGAGTGCAAAA
genomic: ATAACTGCATTGGTATATGTCATCGTGACATCAAACCTCAGAACCTACTTgtaagatatt ... ctcatgtcagGTGAACCCGCACACTCATCAGCTGAAACTATGTGATTTTGGGAGTGCAAAA