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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATCCTCTTGATCTTCTTCCTCCAAGCAAGATGATCTTGGATGAGTGGAAAAGACTCTACTCAAACACCAAGACCAACTTCCGGGAGGTTGCAATCAAAGgtatagctattcattctattatgatggcatggatatgagatgcatgtcattttaatcctccttttaaattttaattttgcag

Basic information

species Glycine max
transcript GLYMA12G28670.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G28670.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv12s0035g01130.t01 (Vitis vinifera), 5'ss of exon 7
AATCCTCTTGATCTTCTTCCTCCAAGCAAGATGATCTTGGATGAGTGGAAAAGACTCTACTCAAACACCAAGACCAACTTCCGGGAGGTTGCAATCAAAGgtatagctattcattctattatgatggcatg---------gatatgagatgcatgtcat---tttaatcctccttttaaattttaattttgcag------
|||||||||||||| || || ||||| ||||||||  ||||||| ||||| |||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||  || ||  || |  | |  |   ||          || |  |||    ||| ||   |  || |||| |||   ||  |  | |    |      
AATCCTCTTGATCTGCTGCCCCCAAGTAAGATGATTCTGGATGAATGGAAGAGACTCTACTCAAATACCAAGACCAATTTCCGTGAGGTTGCAATTAAAGgtatctctctttctttttctttttttttataaaaaaaaatgacaaaagaaatctgttatggatgcaagcctcttttctcatgcttctataaatgataatc

upper sequence: GLYMA12G28670.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv12s0035g01120.t01 (Vitis vinifera), 5'ss of exon 3
AATCCTCTTGATCTTCTTCCTCCAAGCAAGATGATCTTGGATGAGTGGAAAAGACTCTACTCAAACACCAAGACCAACTTCCGGGAGGTTGCAATCAAAGgtatagctat-------------tcattctattatgatggcatggatatgagatgcatgtcat---tttaatcctccttttaaattttaattttgcag--
|||||||||||||| || || ||||| ||||||||  ||||||| ||||| |||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||  || |             |  || | |||| |    |  || |  |||    ||| ||   |  || |||| |||   ||  |  | |    |  
AATCCTCTTGATCTGCTGCCCCCAAGTAAGATGATTCTGGATGAATGGAAGAGACTCTACTCAAATACCAAGACCAATTTCCGTGAGGTTGCAATTAAAGgtatctctctctttctttttcttttctttttttataaaaaaaatgaaaaaagaaatctgttatggatgcaagcctcttttctcatgcttctataaatgat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254316506|gb|GR828043.1|GR828043
EST:     AAGACTCTACTCAAACACCAAGACCAACTTCCGGGAGGTTGCAATCAAAG                         GATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
genomic: AAGACTCTACTCAAACACCAAGACCAACTTCCGGGAGGTTGCAATCAAAGgtatagctat ... aattttgcagGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
EST: gi|23728339|gb|BU762221.1|BU762221
EST:     AAGACTCTACTCAAACACCAAGACCAACTTCCGGGAGGTTGCAATCAAAG                         GATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
genomic: AAGACTCTACTCAAACACCAAGACCAACTTCCGGGAGGTTGCAATCAAAGgtatagctat ... aattttgcagGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
EST: gi|15663835|gb|BI701206.1|BI701206
EST:     AAGACTCTACTCAAACACCAAGACCAACTTCCGGGAGGTTGCAATCAAAG                         GATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
genomic: AAGACTCTACTCAAACACCAAGACCAACTTCCGGGAGGTTGCAATCAAAGgtatagctat ... aattttgcagGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
EST: gi|254327984|gb|GR834949.1|GR834949
EST:     AAGACTCTACTCAAACACCAAGACCAACTTCCGGGAGGTTGCAATCAAAG                         GATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
genomic: AAGACTCTACTCAAACACCAAGACCAACTTCCGGGAGGTTGCAATCAAAGgtatagctat ... aattttgcagGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
EST: gi|208024777|gb|GD825107.1|GD825107
EST:     GGTTGCAATCAAAG                         GATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
genomic: GGTTGCAATCAAAGgtatagctat ... aattttgcagGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
EST: gi|151401866|gb|EV271679.1|EV271679
EST:     AAGACTCTACTCAAACACCAAGACCGACTTCCGGGAGGTTGCAATCAAAG                         GATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
genomic: AAGACTCTACTCAAACACCAAGACCAACTTCCGGGAGGTTGCAATCAAAGgtatagctat ... aattttgcagGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
EST: gi|31468999|gb|CD411027.1|CD411027
EST:     AAGACTCTACTCAAACACCAAGACCAACTTCCGGGAGGTTGCAATCAAAG                         GATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
genomic: AAGACTCTACTCAAACACCAAGACCAACTTCCGGGAGGTTGCAATCAAAGgtatagctat ... aattttgcagGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
EST: gi|254347343|gb|GR853592.1|GR853592
EST:     AAGACTCTACTCAAACACCAAGACCAACTTCCGGGAGGTTGCAATCAAAG                         GATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
genomic: AAGACTCTACTCAAACACCAAGACCAACTTCCGGGAGGTTGCAATCAAAGgtatagctat ... aattttgcagGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
EST: gi|151401022|gb|EV270836.1|EV270836
EST:     AAGACTCTACTCAAACACCAAGACCAACTTCCGGGAGGTTGCAATCAAAG                         GATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
genomic: AAGACTCTACTCAAACACCAAGACCAACTTCCGGGAGGTTGCAATCAAAGgtatagctat ... aattttgcagGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
EST: gi|192315108|gb|FK009932.1|FK009932
EST:     AAGACTCTACTCAAACACCAAGACCAACTTCCGGGAGGTTGCAATCAAAG                         GATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
genomic: AAGACTCTACTCAAACACCAAGACCAACTTCCGGGAGGTTGCAATCAAAGgtatagctat ... aattttgcagGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
EST: gi|31465762|gb|CD407790.1|CD407790
EST:     ACCAACTTCCGGGAGGTTGCAATCAAAG                         GATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
genomic: ACCAACTTCCGGGAGGTTGCAATCAAAGgtatagctat ... aattttgcagGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
EST: gi|192325487|gb|FK018413.1|FK018413
EST:     AAGACTCTACTCAAACACCAAGACCAACTTCCGGGAGGTTGCAATCAAAG                         GATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
genomic: AAGACTCTACTCAAACACCAAGACCAACTTCCGGGAGGTTGCAATCAAAGgtatagctat ... aattttgcagGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
EST: gi|10253933|gb|BE821748.1|BE821748
EST:     AAGACTCTACTCAAACACCAAGACCAACTTCCGGGAGGTTGCAATCAAAG                         GATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
genomic: AAGACTCTACTCAAACACCAAGACCAACTTCCGGGAGGTTGCAATCAAAGgtatagctat ... aattttgcagGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
EST: gi|208120967|gb|GD917038.1|GD917038
EST:     AAGACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAG                         GATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT
genomic: AAGACTCTACTCAAACACCAAGACCAACTTCCGGGAGGTTGCAATCAAAGgtatagctat ... aattttgcagGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATT