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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAATACGAATTTTGATTGGAATCGAATCCAAGAAAGTGGACAAGAAGTAGATCCAATTTTTGGACCTGGATATACAGGATTGGTCAATATTGGAAACAGgtagagttggtccctactattttctgcttattataaaatacaagtttgacacttctgtatttcattttgttttcttccag

Basic information

species Glycine max
transcript GLYMA12G22240.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G22240.1 (Glycine max), 5'ss of exon 6
lower sequence: AT3G20630.1 (Arabidopsis thaliana), 5'ss of exon 6
AAAATACGAATTTTGATTGGAATCGAATCCAAGAAAGTGGACAAGAAGTAGATCCAATTTTTGGACCTGGATATACAGGATTGGTCAATATTGGAAACAGgtagagttggtccctactattttctgcttattataaaatacaagtttgacacttctgtatttcattttgttttcttccag
||||||| |||||||||||||| || || ||||| |||||| ||||| | |  ||| ||||||||||||||||||| ||| | |||||| |||| ||||||||   |        |  ||| || |     | |    | |  |||     ||| ||    |   ||| | || | ||||
AAAATACAAATTTTGATTGGAACCGTATACAAGAGAGTGGAAAAGAATTGGTGCCAGTTTTTGGACCTGGATATACCGGACTTGTCAATCTTGGGAACAGgtac--tctaatggaaaaattgtcagg--gatttcgtttccttgttgatgtcttatgcccatttcttt-tcttttgccag

upper sequence: GLYMA12G22240.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv19s0014g03920.t01 (Vitis vinifera), 5'ss of exon 6
AAAATACGAATTTTGATTGGAATCGAATCCAAGAAAGTGGACAAGAAGTAGATCCAATTTTTGGACCTGGATATACAGGATTGGTCAATATTGGAAACAGgtagagttggtccctactattttct---gcttattataa--aatacaagtttgacacttctgtatttcattttgttttcttccag-----------------------------------------------------------------------------------------------
| ||||| |||||||||||||| ||||| |||||||||||||||||||| || ||| | ||||||||||| ||||||||| | |||||| |||||||||||||   | ||||| |   || ||     ||  | |||    | | |  ||||    || |||     ||  ||   |      |                                                                                                
AGAATACCAATTTTGATTGGAACCGAATTCAAGAAAGTGGACAAGAAGTTGAACCACTATTTGGACCTGGCTATACAGGACTTGTCAATCTTGGAAACAGgtaa--taggtccttgggatgttgctgggcccaatattgtcatttcttgtttcttgctcctgaggcccagcttaggtggcaagaaattggatggggatgttgaggcgcaaggtttaactcaatgttaacaaaaatacctataaaaatattgttcttctttgctcatttaatttcttgcag