Sequence
atgc intronic sequence ATGC exonic sequenceATTCACCAAGAAAAGTGATGTATACAGTTTTGGGGTGTTGCTCTTTGAAATTATGGCTGGCAGGAATCCTCAGCAGGGTCTTATGGAATACGTAGAGCTTgtaagatctctttctctcccttcaaaccatagtgaggataatggaattggtggttacttttttggagatatatagtgcataccatacaaaacaatttaag...
Basic information
species | Glycine max |
transcript | GLYMA12G16650.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G16650.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os08g04420.1 (Oryza sativa), 5'ss of exon 6
ATTCACCAAGAAAAGTGATGTATACAGTTTTGGGGTGTTGCTCTTTGAAATTATGGCTGGCAGGAATCCTCAGCAGGGTCTTATGGAATACGTAGAGCTTgtaagatctctttctctcccttcaaaccatagtgaggataatggaattggtggttacttttttggagatatatagtgcataccatacaaaacaatttaag--------------------------------------
||||| ||||| |||||||||||||| | || || ||||| |||||||| || |||||||| || ||||| || ||||| |||||||| |||||||||||||| | || | | | | | | | | ||| | ||||| |||| | | || | | || |||| |||||
GTTCACAAAGAAGAGTGATGTATACAGCTACGGCGTTTTGCTGTTTGAAATGATTGCTGGCAGAAACCCTCAACAAGGTCTAATGGAATATGTAGAGCTTgtaaggaagccccctacttagttccttactctttttgttcaagaatttgttccttactcttttttgttcaagaattgttttttct-cagaaca--ttaaggtttgtaattgctgacttacaatgcaatctatgatcag
upper sequence: GLYMA12G16650.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv19s0014g04960.t01 (Vitis vinifera), 5'ss of exon 6
ATTCACCAAGAAAAGTGATGTATACAGTTTTGGGGTGTTGCTCTTTGAAATTATGGCTGGCAGGAATCCTCAGCAGGGTCTTATGGAATACGTAGAGCTTgtaagatctctttctctcccttcaaaccata-------gtgaggataatggaattggtggttacttttttggagatatatagtgcataccatacaaaacaatttaag
||||| ||||| |||||||| |||||||||||||| ||||| |||||| |||| |||||| |||||||||| ||||| || |||||||| || |||||||||||||||||||| ||| || | || | | | | || | | | | ||| | | | | || || ||
CTTCACTAAGAAGAGTGATGTTTACAGTTTTGGGGTATTGCTTTTTGAACTTATTGCTGGCCGGAATCCTCAACAGGGGCTCATGGAATATGTTGAGCTTgtaagatctctttcgctctctctcacacacacacctatgcgtgcatgcacacacaaataagcatatcagaggaagtgaaaaaagtatggaatgttaatgg-------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|31475684|gb|CD417712.1|CD417712EST: GAATCCTCAGCAGGGTCTTATGGAATACGTAGAGCTT GCAGCAATGAACACTGAGGGAAAAGTTGGGTGGGAAGAAATTGTGGATTCT
genomic: GAATCCTCAGCAGGGTCTTATGGAATACGTAGAGCTTgtaagatctc ... ggatgattagGCAGCAATGAACACTGAGGGAAAAGTTGGGTGGGAAGAAATTGTGGATTCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTCACCAAGAAAAGTGATGTATACAGTTTTGGGGTGTTGCTCTTTGAAATTATGGCTGGCAGGAATCCTCAGCAGGGTCTTATGGAATACGTAGAGCTTgtaagatctctttctctcccttcaaaccatagtgaggataatggaattggtggttacttttttggagatatatagtgcataccatacaaaacaatttaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttggtgg