Sequence
atgc intronic sequence ATGC exonic sequenceAGGTTTGCTGCATTCTTAGCCCCTTTGACTTCTGGTCGTGTTACCATTGCTGTTAGTGCTGTTTACATCTCCAAGgtagtgagacgatccttgtttgtggatttcacatttgtctgtgttttttctgtgtattttactaactcgtatcaaatttgatattttaccttatcgtgtcatttatttgctcttag
Basic information
species | Glycine max |
transcript | GLYMA12G14060.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G14060.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G06310.1 (Arabidopsis thaliana), 5'ss of exon 6
AGGTTTGCTGCATTCTTAGCCCCTTTGACTTCTGGTCGTGTTACCATTGCTGTTAGTGCTGTTTACATCTCCAAGgtagtgagacgatccttgtttgtggatttcacatttgtctgtgttttttctgtgtattttactaactcgtatcaaatttgatattttaccttatcgtgtcatttatttgctcttag--
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AGATTTGGAGCATTCTTGGCCCCTTTGACATCTGGTCGTGTCACAATTGCTTCAAGTGCAATTTAT-TCTGCAAAG-
upper sequence: GLYMA12G14060.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv12s0028g02660.t01 (Vitis vinifera), 5'ss of exon 6
AGGTTTGCTGCATTCTTAGCCCCTTTGACTTCTGGTCGTGTTACCATTGCTGTTAGTGCTGTTTACATCTCCAAGgtagtga--gacgat-----------ccttgtttgtggatt--tcacatttgtctgtgttttttctgtgtattttactaac-------tcgtatcaaatttgatattttacct-tatcgtgtcatttatttgctcttag---
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AGGTTTGCGGCCTTCCTAGCCCCTTTGACATCAGGTCGTGTTACCATTGCAACCAGTGCGGTTTACTCATCAAAGgtaatagatgctgattggggtgtttcctctgttgataaactgatctccaacatcttgaatttttgtggggatagaagaaatgggctatttataccaagatctgtatgtgattgatgctgtttcaattttcttctcttatcag
upper sequence: GLYMA12G14060.1 (Glycine max), 5'ss of exon 6
lower sequence: EFJ13387 (Selaginella moellendorffii), 5'ss of exon 7
AGGTTTGCTGCATTCTTAGCCCCTTTGACTTCTGGTCGTGTTACCATTGCTGTTAGTGCTGTTTACATCTCCAAGgtagtgagacgatccttgtttgtggatttcacatttgtctgtgttttttctgtgtattttactaactcgtatcaaatttgatattttaccttatcgtgtcatttatttgctcttag
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AGGTTTGGTGCTTTCATGGCTCCTCTAACGTCTGGACGTGTTACCATTGCTGTCAGTGCTGTTTATCAATCAAAGgt----------ttgccacttgtatacttta-gcttctttttcttcatagagctgatttaag------------------------------------------------------
upper sequence: GLYMA12G14060.1 (Glycine max), 5'ss of exon 6
lower sequence: EFJ04838 (Selaginella moellendorffii), 5'ss of exon 7
AGGTTTGCTGCATTCTTAGCCCCTTTGACTTCTGGTCGTGTTACCATTGCTGTTAGTGCTGTTTACATCTCCAAGgtagtgagacgatccttgtttgtggatttcacatttgtctgtgttttttctgtgtattttactaactcgtatcaaatttgatattttaccttatcgtgtcatttatttgctcttag
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AGGTTTGGTGCTTTCATGGCTCCTCTAACGTCTGGACGTGTTACCATTGCTGTCAGTGCTGTTTATCAATCAAAGgt----------ttgccacttgtatacttta-gcttcttttttttcatagagctgatttaag------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192326408|gb|FK017695.1|FK017695EST: TGACTTCTGGTCGTGTTACCATTGCTGTTAGTGCTGTTTACATCTCCAAG ATTAGCTTGGCCATTGCTATAAGATATGCATTGACAAGGCGAGCATTCTCC
genomic: TGACTTCTGGTCGTGTTACCATTGCTGTTAGTGCTGTTTACATCTCCAAGgtagtgagac ... ttgctcttagATTAGCTTGGCCATTGCTATAAGATATGCATTGACAAGGCGAGCATTCTCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGGTTTGCTGCATTCTTAGCCCCTTTGACTTCTGGTCGTGTTACCATTGCTGTTAGTGCTGTTTACATCTCCAAGgtagtgagacgatccttgtttgtggatttcacatttgtctgtgttttttctgtgtattttactaactcgtatcaaatttgatattttaccttatcgtgtcatttatttgctcttag
- - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT