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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTGGCCACCTTTTTTTCCCATCATTCATCATGACATTGCAAAGGAAATACCAATACATCTTCAAAGGATCCAGTACATTGCATTTACAACATGGTTGGgtatgttgaactccagaactgtcttctagaatgttttaagtcataactagctactaacttgatgagaagtaatctgtactttgtagttgagttggtaaat...

Basic information

species Glycine max
transcript GLYMA12G11820.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G11820.2 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os01g57220.1 (Oryza sativa), 5'ss of exon 5
AATTGGCCACCTTTTTTTCCCATCATTCATCATGACATTGCAAAGGAAATACCAATACATCTTCAAAGGATCCAGTACATTGCATTTACAACATGGTTGGgtatgt-tgaactccagaactgtcttctagaatgttttaagtcataactagctactaacttgatgagaagtaatctgtactttgtagttgagttggtaaat--
|| |||||||| || || || || ||||||||||||||| |||| || |||||||| || || |||||||| || ||| |||||||| |  ||| |||||||| || | |  |  ||   |   || ||      |||  ||     |  | |   ||     | | ||| |  ||  | |   | || ||      || |  
AACTGGCCACCCTTCTTCCCTATTATTCATCATGACATTTCAAATGAGATACCAATCCACCTACAAAGGATGCAATACCTTGCATTTTCTTCATTGTTGGgtaagtgttagttttagttttaagttttaactctctttttgttccctcatgttgggaaagctgtcacaagaa--ctaaaatacctggtggaacca-caattct

upper sequence: GLYMA12G11820.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv12s0059g01930.t01 (Vitis vinifera), 5'ss of exon 5
AATTGGCCACCTTTTTTTCCCATCATTCATCATGACATTGCAAAGGAAATACCAATACATCTTCAAAGGATCCAGTACATTGCATTTACAACATGGTTGGgtatgttgaactccagaactgtcttctagaatgttttaagtcataactagctactaacttgatgagaagtaatctgtactttgtagttgagttggtaaat-----
||||||||||| ||||| ||| | |||||||||||||||||||| ||||||||||| ||||  || | | | |||||| ||||||| || ||||  |||||||||| ||||   | |    | ||  | |    || ||||   || |  |  | ||  ||||      |  | || | |   ||| ||  ||  |         
AATTGGCCACCATTTTTCCCCCTTATTCATCATGACATTGCAAATGAAATACCAATCCATCAACAGAAGTTGCAGTACGTTGCATTCACGACATATTTGGgtatgt-gaaccttaaagtcctgtttgatagaagttcaagtttcaaatgtc--ccaaagtgatttt--ctcttgtggaatccatagatgcatttctcttctcttt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26045882|gb|CA783314.1|CA783314
EST:     ACCAATACATCTTCAAAGGATCCAGTACATTGCATTTACAACATGGTTGG                         GTTTGGTTCTGTGTCTTTTATGGAATATTG
genomic: ACCAATACATCTTCAAAGGATCCAGTACATTGCATTTACAACATGGTTGGgtatgttgaa ... atatctgcagGTTTGGTTCTGTGTCTTTTATGGAATATTG
EST: gi|15813443|gb|BI785718.1|BI785718
EST:     ACCAATACATCTTCAAAGGATCCAGTACATTGCATTTACAACATGGTTGG                         GTTTGGTTCTG
genomic: ACCAATACATCTTCAAAGGATCCAGTACATTGCATTTACAACATGGTTGGgtatgttgaa ... atatctgcagGTTTGGTTCTG