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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCACCTAGGAGATACTCCCCATAACTTGGCTGAAAGTGATTTCGAACATTTGGCTCGCAAGACAGAGGGGTTTTCAGGTTCAGATATATCTGTCTGTgtaagtttgacttctatatttaatacctggttagaataatgatcattttatttggattagtgttaaaggtaattggacctattctacag

Basic information

species Glycine max
transcript GLYMA12G09300.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G09300.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv06s0080g00160.t01 (Vitis vinifera), 5'ss of exon 6
GTGCACCTAGGAGATACTCCCCATAACTTGGCTGAAAGTGATTTCGAACATTTGGCTCGCAAGACAGAGGGGTTTTCAGGTTCAGATATATCTGTCTGTgtaagtttgacttctatatttaatacctggttagaataatgatca----ttttatttggattagtgttaaaggtaattggacctattctacag---------------------------------------
||||| || ||||||||||| || |||||| ||||||||||||| |||   || ||||  |||||||| |||||||| |||||||||||  |||| |||||||||  || | ||||||   || |     || | |     |      |||  |  | | ||  ||| |||||         || |  | |                                        
GTGCATCTTGGAGATACTCCTCACAACTTGACTGAAAGTGATTTTGAAAGCTTAGCTCAGAAGACAGAAGGGTTTTCTGGTTCAGATATTGCTGTTTGTgtaagtgcgagtgctatatcagatgctcaactaaattctccctttgagctttcctcagtagtatggtttaaggtgggacagaatagtagaaaatagcttatcatcttgctttttttggtgtaccctttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207783493|gb|GD756375.1|GD756375
EST:     TTGGCNCGCAAGACAGAGGGGTTTTCAGGTTCAGATATATCTGTCTGT                         GTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTT
genomic: TTGGCTCGCAAGACAGAGGGGTTTTCAGGTTCAGATATATCTGTCTGTgtaagtttga ... tattctacagGTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTT
EST: gi|193717956|gb|FK656000.1|FK656000
EST:     ATTTGGCTCGCAAGACAGAGGGGTTTTCAGGTTCAGATATATCTGTCTGT                         GTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTT
genomic: ATTTGGCTCGCAAGACAGAGGGGTTTTCAGGTTCAGATATATCTGTCTGTgtaagtttga ... tattctacagGTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTT
EST: gi|208047400|gb|GD848263.1|GD848263
EST:     ATTTGGCTCGCAAGACAGAGGGGTTTTCAGGTTCAGATATATCTGTCTGT                         GTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTT
genomic: ATTTGGCTCGCAAGACAGAGGGGTTTTCAGGTTCAGATATATCTGTCTGTgtaagtttga ... tattctacagGTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTT
EST: gi|51338581|gb|CO982447.1|CO982447
EST:     ATTTGGCTCGCAAGACAGAGGGGTTTTCAGGTTCAGATATATCTGTCTGT                         GTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTT
genomic: ATTTGGCTCGCAAGACAGAGGGGTTTTCAGGTTCAGATATATCTGTCTGTgtaagtttga ... tattctacagGTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTT
EST: gi|208281890|gb|GE080142.1|GE080142
EST:     ATTTGGCTCGCAAGACAGAGGGGTTTTCAGGTTCAGATATATCTGTCTGT                         GTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTT
genomic: ATTTGGCTCGCAAGACAGAGGGGTTTTCAGGTTCAGATATATCTGTCTGTgtaagtttga ... tattctacagGTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTT
EST: gi|208223435|gb|GE022174.1|GE022174
EST:     TGGCTCGCAAGTTACTAGAGGGGTTTTCAGGTTCAGATATATCTGTCTGT                         GTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTT
genomic: TGGCTCGCAAG--AC-AGAGGGGTTTTCAGGTTCAGATATATCTGTCTGTgtaagtttga ... tattctacagGTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTT
EST: gi|208221241|gb|GE016375.1|GE016375
EST:     ATTTGGCTCGCAAGACAGAGGGGTTTTCAGGTTCAGATATATCTGTCTGT                         GTGAAGGATTGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTT
genomic: ATTTGGCTCGCAAGACAGAGGGGTTTTCAGGTTCAGATATATCTGTCTGTgtaagtttga ... tattctacagGTGAAGGA-TGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTT
EST: gi|18735120|gb|BM528575.1|BM528575
EST:     ATTTGGCTCGCAAGACAGAGGGGTTTTCAGGTTCAGATATATCTGTCTGT                         GTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTT
genomic: ATTTGGCTCGCAAGACAGAGGGGTTTTCAGGTTCAGATATATCTGTCTGTgtaagtttga ... tattctacagGTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTT
EST: gi|208248007|gb|GE048601.1|GE048601
EST:     ATTTGGCTCGCAAGACAGAGGGGTTTTCAGGTTCAGATATATCTGTCTGT                         GTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTT
genomic: ATTTGGCTCGCAAGACAGAGGGGTTTTCAGGTTCAGATATATCTGTCTGTgtaagtttga ... tattctacagGTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTT
EST: gi|57575390|gb|CX548365.1|CX548365
EST:     ATTTGGCTCGCAAGACAGAGGGGTTTTCAGGTTCAGATATATCTGTCTGT                         GTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTT
genomic: ATTTGGCTCGCAAGACAGAGGGGTTTTCAGGTTCAGATATATCTGTCTGTgtaagtttga ... tattctacagGTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTT
EST: gi|193574067|gb|FK528783.1|FK528783
EST:     TTGGTCTCGCAAGACAGAGGGGTTTTTCAGGTTCAGATATATCTGTCTGT                         GTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTT
genomic: TTGG-CTCGCAAGACAGAGGGG-TTTTCAGGTTCAGATATATCTGTCTGTgtaagtttga ... tattctacagGTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTT
EST: gi|193435211|gb|FK400299.1|FK400299
EST:     ATTTGGCTCGCAAGACAGAGGGGTTTTCAGGTTCAGATATATCTGTCTGT                         GTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTT
genomic: ATTTGGCTCGCAAGACAGAGGGGTTTTCAGGTTCAGATATATCTGTCTGTgtaagtttga ... tattctacagGTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTT
EST: gi|193558165|gb|FK514102.1|FK514102
EST:     GATATATCTGTCTGT                         GTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTT
genomic: GATATATCTGTCTGTgtaagtttga ... tattctacagGTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTT
EST: gi|208180236|gb|GD973693.1|GD973693
EST:     ATTTGGCTCGCAAGACAGAGGGGTTTTCAGGTTCAGATATATCTGTCTGT                         GTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTT
genomic: ATTTGGCTCGCAAGACAGAGGGGTTTTCAGGTTCAGATATATCTGTCTGTgtaagtttga ... tattctacagGTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTT
EST: gi|207704806|gb|GD684627.1|GD684627
EST:     ATTTGGCTCGCAAGACAGAGGGGTTTTCAGGTTCAGATATATCTGTCTGT                         GTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTT
genomic: ATTTGGCTCGCAAGACAGAGGGGTTTTCAGGTTCAGATATATCTGTCTGTgtaagtttga ... tattctacagGTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTT
EST: gi|18721136|gb|BM523322.1|BM523322
EST:     ATTTGGCTCGCAAGACAGAGGGGTTTTCAGGTTCAGATATATCTGTCTGT                         GTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGGTGCCATGTTT
genomic: ATTTGGCTCGCAAGACAGAGGGGTTTTCAGGTTCAGATATATCTGTCTGTgtaagtttga ... tattctacagGTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTT
EST: gi|193605312|gb|FK558586.1|FK558586
EST:     ATTTGGCTCGCAAGACAGAGGGGTTTTCAGGTTCAGATATATCTGTCTGT                         GTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTT
genomic: ATTTGGCTCGCAAGACAGAGGGGTTTTCAGGTTCAGATATATCTGTCTGTgtaagtttga ... tattctacagGTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTT
EST: gi|193567710|gb|FK527407.1|FK527407
EST:     TTTGGTCTCGCAAGACAGAGGGGTTTTCAGGTTCAGATATATCTGTCTGT                         GTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTT
genomic: TTTGG-CTCGCAAGACAGAGGGGTTTTCAGGTTCAGATATATCTGTCTGTgtaagtttga ... tattctacagGTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTT
EST: gi|193729747|gb|FK664693.1|FK664693
EST:     ATTTGGCTCGCAAGACAGAGGGGTTTTCAGGTTCAGATATATCTGTCTGT                         GTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTT
genomic: ATTTGGCTCGCAAGACAGAGGGGTTTTCAGGTTCAGATATATCTGTCTGTgtaagtttga ... tattctacagGTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTT
EST: gi|208340184|gb|GE136978.1|GE136978
EST:     ATTTGGCTCGCAAGACAGAGGGGTTTTCAGGTTCAGATATATCTGTCTGT                         GTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTT
genomic: ATTTGGCTCGCAAGACAGAGGGGTTTTCAGGTTCAGATATATCTGTCTGTgtaagtttga ... tattctacagGTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATG-TT
EST: gi|13482347|gb|BG511690.1|BG511690
EST:     ATTTGGCTCGCAAGACAGAGGGGTTTTCAGGTTCAGATATATCTGTCTGT                         GTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTT
genomic: ATTTGGCTCGCAAGACAGAGGGGTTTTCAGGTTCAGATATATCTGTCTGTgtaagtttga ... tattctacagGTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTT
EST: gi|58014504|gb|CX701246.1|CX701246
EST:     ATTTGGCTCGCAAGACAGAGGGGTTTTCAGGTTCAGATATATCTGTCTGT                         GTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTT
genomic: ATTTGGCTCGCAAGACAGAGGGGTTTTCAGGTTCAGATATATCTGTCTGTgtaagtttga ... tattctacagGTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTT
EST: gi|58023445|gb|CX710186.1|CX710186
EST:     ATTTGGCTCGCAAGACAGAGGGGTTTTCAGGTTCAGATATATCTGTCTGT                         GTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTT
genomic: ATTTGGCTCGCAAGACAGAGGGGTTTTCAGGTTCAGATATATCTGTCTGTgtaagtttga ... tattctacagGTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTT
EST: gi|208327862|gb|GE124610.1|GE124610
EST:     ATTTGGCTCGCAAGACAGAGGGGTTTTCAGGTTCAGATATATCTGTCTGT                         GTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTT
genomic: ATTTGGCTCGCAAGACAGAGGGGTTTTCAGGTTCAGATATATCTGTCTGTgtaagtttga ... tattctacagGTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTT
EST: gi|208306803|gb|GE106730.1|GE106730
EST:     TTTTCAGGTTCAGATATATCTGTCTGT                         GTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTT
genomic: TTTTCAGGTTCAGATATATCTGTCTGTgtaagtttga ... tattctacagGTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTT
EST: gi|193500167|gb|FK463992.1|FK463992
EST:     ATTTGGCTCGCAAGACAGAGGGGTTTTCAGGTTCAGATATATCTGTCTGT                         GTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTT
genomic: ATTTGGCTCGCAAGACAGAGGGGTTTTCAGGTTCAGATATATCTGTCTGTgtaagtttga ... tattctacagGTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTT
EST: gi|13252419|gb|BG363322.1|BG363322
EST:     ATTTGGCTCGCAAGACAGAGGGGTTTTCAGGTTCAGATATATCTGTCTGT                         GTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTT
genomic: ATTTGGCTCGCAAGACAGAGGGGTTTTCAGGTTCAGATATATCTGTCTGTgtaagtttga ... tattctacagGTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTT
EST: gi|193722188|gb|FK660798.1|FK660798
EST:     ATTTGGCTCGCAAGACAGAGGGGTTTTCAGGTTCAGATATATCTGTCTGT                         GTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTT
genomic: ATTTGGCTCGCAAGACAGAGGGGTTTTCAGGTTCAGATATATCTGTCTGTgtaagtttga ... tattctacagGTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGCACCTAGGAGATACTCCCCATAACTTGGCTGAAAGTGATTTCGAACATTTGGCTCGCAAGACAGAGGGGTTTTCAGGTTCAGATATATCTGTCTGTgtaagtttgacttctatatttaatacctggttagaataatgatcattttatttggattagtgttaaaggtaattggacctattctacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA