1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGGAGCAACTAAAAGGAAACTTATCCGTTGTGACCATTCGTCCCACCATTGTTACCAGCACATTCAAAGAACCTTTCCCTGGTTGGGCTGAAGGTGTAAGgtaaatctttgtttaaatttgccttcctcaacacatgttaagtattgaatatccatttagtgatgatttatgtgcatatttgaaaagaaataacccacta...
species | Glycine max |
transcript | GLYMA12G09270.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GTTACCAGCACATTCAAAGAACCTTTCCCTGGTTGGGCTGAAGGTGTAAG AACCATTGACAGTTTAGCTGTAGCTTATGGGAAEST: gi|193649574|gb|FK596711.1|FK596711
genomic: GTTACCAGCACATTCAAAGAACCTTTCCCTGGTTGGGCTGAAGGTGTAAGgtaaatcttt ... ttggttacagAACCATTGACAGTTTAGCTGTAGCTTATGGGAA
EST: GTTACCAGCACATTCAAAGAACCTTTCCCTGGTTGGGCTGAAGGTGTAAG AACCATTGACAGTTTAGCTGTAGCTTATGGGAAAGGAAAATTAACATGCTTEST: gi|193611403|gb|FK564097.1|FK564097
genomic: GTTACCAGCACATTCAAAGAACCTTTCCCTGGTTGGGCTGAAGGTGTAAGgtaaatcttt ... ttggttacagAACCATTGACAGTTTAGCTGTAGCTTATGGGAAAGGAAAATTAACATGCTT
EST: GTTACCAGCACATTCAAAGAACCTTTCCCTGGTTGGGCTGAAGGTGTAAG AACCATTGACAGTTTAGCTGTAGCTTATGGGAAAGGAAAATTAACATGCTT
genomic: GTTACCAGCACATTCAAAGAACCTTTCCCTGGTTGGGCTGAAGGTGTAAGgtaaatcttt ... ttggttacagAACCATTGACAGTTTAGCTGTAGCTTATGGGAAAGGAAAATTAACATGCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGAGCAACTAAAAGGAAACTTATCCGTTGTGACCATTCGTCCCACCATTGTTACCAGCACATTCAAAGAACCTTTCCCTGGTTGGGCTGAAGGTGTAAGgtaaatctttgtttaaatttgccttcctcaacacatgttaagtattgaatatccatttagtgatgatttatgtgcatatttgaaaagaaataacccacta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttcctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaagaaa