Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAATAAAGACAAATGTGATTGGTACACTGAACATGCTTGGGCTTGCCAAGCGAGTTGGGGCAAGgttggtaaattgtctttggaaaatgataatttcagcttctatcatcagttggtctttattctttttcttcttgttagtcttagttcttattttattggcag

Basic information

species Glycine max
transcript GLYMA12G06990.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G06990.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os03g16980.4 (Oryza sativa), 5'ss of exon 6
ACAATAAAGACAAATGTGATTGGTACACTGAACATGCTTGGGCTTGCCAAGCGAGTTGGGGCAAGgttggtaaattgtctttggaaaatgataatttcagcttctatcat-cagttggtctttattctttttcttcttgttagtcttagttcttattttat-tggcag
|| || |||||||| || || || || |||||||||||||| ||||||||| ||||||| || ||||||||   || | ||     |||| | |||  | ||| |   || ||  |  |    | | | |         | |      ||| |||| || |   ||||
ACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtg--ttttttt-----aatgctgatt--aacttgtcctatgcaacttatgagaactatata-------atgaagggaggtttttatgttgtactgcag

upper sequence: GLYMA12G06990.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G382038_T01 (Zea mays), 5'ss of exon 7
ACAATAAAGACAAATGTGATTGGTACACTGAACATGCTTGGGCTTGCCAAGCGAGTTGGGGCAAGgttggtaaattgtctttggaaaatgataatttcagcttctatcatcagttggtct-ttattctttttcttcttgttagtcttagttcttattttattggcag
|| || ||||||||||| |||||||| ||||||||||| || ||||| ||| ||||||| || ||||  ||   |  || |  |  | ||||  || || |  ||    | |     ||  ||| |   ||| || |||  | |   ||                  
ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAGAGAGTTGGAGCTAGgtcagtgt-tcatcat--gccattgattcttccaacgcctcatgtgaaaaactcagttactgaatttatttttg--aattgcag------------------

upper sequence: GLYMA12G06990.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G165357_T02 (Zea mays), 5'ss of exon 5
ACAATAAAGACAAATGTGATTGGTACACTGAACATGCTTGGGCTTGCCAAGCGAGTTGGGGCAAGgttggtaaattgtctttggaaaatgataatttcagcttctatcatcagttggtct-ttattctttttcttcttgttagtcttagttcttattttattggcag
|| || ||||||||||| |||||||| ||||||||||| || ||||| ||| ||||||| || ||||   |   |  || |  |  | ||||  || ||||  ||    | |     ||  |||     ||| || |||  | |   ||                  
ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAGAGAGTTGGAGCTAGgtcattgt-tcatcat--gccattgattcttccagcgcctcatgtgaaaaactcaattacagaatttatttttg--aattgcag------------------

upper sequence: GLYMA12G06990.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G300412_T01 (Zea mays), 5'ss of exon 12
ACAATAAAGACAAATGTGATTGGTACACTGAACATGCTTGGGCTTGCCAAGCGAGTTGGGGCAAGgttggtaaattgtctttggaaaatgataatttcagcttctatcatcagttggtct-ttattctttttcttcttgttagtcttagttcttattttattggcag
|| || ||||||||||| |||||||| ||||||||||| || ||||| ||| ||||||| || ||||  ||   |  || |  |  | ||||  || ||||  ||    | |     ||  ||| |   ||| || |||  | |   ||                  
ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAGAGAGTTGGAGCTAGgtcagtgt-tcatcat--gccattgattcttccagcgcctcatgtgaaaaactcagttactgaatttatttttg--aattgcag------------------

upper sequence: GLYMA12G06990.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G044027_T02 (Zea mays), 5'ss of exon 6
ACAATAAAGACAAATGTGATTGGTACACTGAACATGCTTGGGCTTGCCAAGCGAGTTGGGGCAAGgttggtaaattgtctttggaaaatgataatttcagcttctatcatcagttggtctttattctttttcttcttgttagtcttagttcttattttattggcag
|| || ||||||||||| |||||||| ||||||||||| || ||||| ||| ||||||| || ||||  ||   |  || |  |  | ||||  || || |  ||  |||  |     ||   ||       || || | | |   ||                  
ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgt-tcatcat--gctattgattcttccaccgcct--catgtgaaaaactcagttacagaatttattttgaattgcag------------------

upper sequence: GLYMA12G06990.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G157772_T02 (Zea mays), 5'ss of exon 3
ACAATAAAGACAAATGTGATTGGTACACTGAACATGCTTGGGCTTGCCAAGCGAGTTGGGGCAAGgttggtaaattgtctttggaaaatgataatttcagcttctatcatcagttggtct-ttattctttttcttcttgttagtcttagttcttattttattggcag
|| || ||||||||||| |||||||| ||||||||||| || ||||| ||| ||||| | || ||||  ||   |  || |  |  | ||||  ||  |||  ||    | |     ||  |||     ||| || |||  | |   ||                  
ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAGAGAGTTAGAGCTAGgtcagtgt-tcatcat--gccattgattcttctagcgcctcatgtgaaaaactcagttacagaatttatttttg--aattgcag------------------

upper sequence: GLYMA12G06990.1 (Glycine max), 5'ss of exon 6
lower sequence: AT3G46440.1 (Arabidopsis thaliana), 5'ss of exon 5
-----------------------------------ACAATAAAGACAAATGTGATTGGTACACTGAACATGCTTGGGCTTGCCAAGCGAGTTGGGGCAAGgttggtaaattgtctttggaaaatgataatttcagcttctatcatcagttggtctttattctttttcttcttgttagtcttagttcttattttattggcag
                                   ||||| ||||| ||||||||||| |||||||||||||| || || |||||||| ||||| ||||||||             || |||||||||   ||   || ||| |     |  | || ||  |     || |   ||   |    |  ||    |  |    
CTTCTCCTATCTTCTACAAGTACAACCCTGTGAAGACAATCAAGACCAATGTGATTGGCACACTGAACATGCTAGGTCTCGCCAAGCGTGTTGGAGCAAGgtt-------------tgcaaaatgataccctc--tttttattacttacttctgttgatcttcgcctttgtgactaacttactcttctaccggacag----

upper sequence: GLYMA12G06990.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G59290.2 (Arabidopsis thaliana), 5'ss of exon 5
ACAATAAAGACAAATGTGATTGGTACACTGAACATGCTTGGGCTTGCCAAGCGAGTTGGGGCAAGgttggtaaattgtctttggaaaatgataatttcagcttctatcatcagttggtctttattctttttcttcttgttagtcttagttcttattttattggcag
||||| ||||| ||||||||||||||||| |||||||| || ||||||||||| ||||| ||||||||   |     ||||       || |  |   |  |||||    ||       || |   |  |     |||| | | || |||||| |   |   |   
ACAATCAAGACCAATGTGATTGGTACACTCAACATGCTCGGTCTTGCCAAGCGTGTTGGAGCAAGgtt--caggacatcttc------tgct--tcctattttctaatcacatccttctttcaaaatgctcggctttgtaactatttgttcttttcgaaacag---

upper sequence: GLYMA12G06990.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 6
ACAATAAAGACAAATGTGATTGGTACACTGAACATGCTTGGGCTTGCCAAGCGAGTTGGGGCAAGgttggtaaattgtctttggaaaatgataatttcagcttctatcatcagttggtctttattctttttcttcttgttagtcttagttcttattttattggcag
|||||||| ||||| || |||||||||||||| ||||| || |||||||| |||||||| |||||||| |  | ||| |||    |  | ||   || | |    ||||| | ||     | | | | ||   |  ||||| | ||                    
ACAATAAAAACAAACGTCATTGGTACACTGAATATGCTGGGACTTGCCAAACGAGTTGGAGCAAGgtttgggatttgacttc---attttattcctttaaccaggatcataaatt---tctcaatttattaaattatgttaatgtttaacag--------------

upper sequence: GLYMA12G06990.1 (Glycine max), 5'ss of exon 6
lower sequence: PP1S189_118V6.1 (Physcomitrella patens), 5'ss of exon 6
ACAATAAAGACAAATGTGATTGGTACACTGAACATGCTTGGGCTTGCCAAGCGAGTTGGGGCAAGgttggtaaattgtctttggaaaatgataatttcagcttctatcatcagttggtctttattctttttcttcttgttagtcttagttcttattttattggcag---
|| || |||||||||||||||||||| || ||||||||||| || || || |||||||| |||||||  | ||| | |||||| | |        || |  |||| |  |||   ||    |      |    |   | |  || |  |   |||  |    | ||   
ACCATCAAGACAAATGTGATTGGTACGCTCAACATGCTTGGACTCGCTAAACGAGTTGGTGCAAGgt--gcaaaat-tctttgtatatcttgctctttaatttctcttgtcaccaggaaactggcagctggacttacgatt-tcatgttatgtatactgcaagtagctc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298196598|gb|HO041341.1|HO041341
EST:     GTGATTGGTACACTGAACATGCTTGGGCTTGCCAAGCGAGTTGGGGCAAG                         GATTTTACTCACATCAACATCTGAGGTATATGGGGATCCTCTTGTGCATCC
genomic: GTGATTGGTACACTGAACATGCTTGGGCTTGCCAAGCGAGTTGGGGCAAGgttggtaaat ... ttattggcagGATTTTACTCACATCAACATCTGAGGTATATGGGGATCCTCTTGTGCATCC
EST: gi|16277140|gb|BI942224.1|BI942224
EST:     GTGATTGGTACACTGAACATGCTTGGGCTTGCCAAGCGAGTTGGGGCAAG                         GATTTTACTCACATCAACATCTGAGGTATATGGGGATCCTCTTGTGCATCC
genomic: GTGATTGGTACACTGAACATGCTTGGGCTTGCCAAGCGAGTTGGGGCAAGgttggtaaat ... ttattggcagGATTTTACTCACATCAACATCTGAGGTATATGGGGATCCTCTTGTGCATCC
EST: gi|298196896|gb|HO041639.1|HO041639
EST:     GTGATTGGTACACTGAACATGCTTGGGCTTGCCAAGCGAGTTGGGGCAAG                         GATTTTACTCACATCAACATCTGAGGTATATGGGGATCCTCTTGTGCATCC
genomic: GTGATTGGTACACTGAACATGCTTGGGCTTGCCAAGCGAGTTGGGGCAAGgttggtaaat ... ttattggcagGATTTTACTCACATCAACATCTGAGGTATATGGGGATCCTCTTGTGCATCC