Sequence
atgc intronic sequence ATGC exonic sequenceACAATAAAGACAAATGTGATTGGAACACTGAACATGCTTGGTCTTGCTAAGCGTGTGGGAGCAAGgttatctctctttttcgaaatacaaaagttgatagcctataccattaccatctgttgattttacaagttgtaattttgattgacag
Basic information
species | Glycine max |
transcript | GLYMA12G06980.3 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G06980.2 (Glycine max), 5'ss of exon 5
lower sequence: AT3G46440.1 (Arabidopsis thaliana), 5'ss of exon 5
-----------------------------------ACAATAAAGACAAATGTGATTGGAACACTGAACATGCTTGGTCTTGCTAAGCGTGTGGGAGCAAGgttatctctctttttcgaaatacaaaagttgatagcctataccattaccatctgttgattttac-aagttgtaattttgattgacag
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CTTCTCCTATCTTCTACAAGTACAACCCTGTGAAGACAATCAAGACCAATGTGATTGGCACACTGAACATGCTAGGTCTCGCCAAGCGTGTTGGAGCAAGgtt-----tgcaaaatgataccctctttttattacttacttctgttgatcttcgcctttgtgactaacttactcttctaccggacag
upper sequence: GLYMA12G06980.2 (Glycine max), 5'ss of exon 5
lower sequence: AT5G59290.2 (Arabidopsis thaliana), 5'ss of exon 5
ACAATAAAGACAAATGTGATTGGAACACTGAACATGCTTGGTCTTGCTAAGCGTGTGGGAGCAAGgttatctctctttttcgaaatacaaaagttgatagcctataccattaccatctgttgattttacaagttgtaattttgattgacag--
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ACAATCAAGACCAATGTGATTGGTACACTCAACATGCTCGGTCTTGCCAAGCGTGTTGGAGCAAGgttcaggacatcttctgcttcctattttctaatcacatccttctttcaaaatgctcggctttgtaactatttgttcttttcgaaacag
upper sequence: GLYMA12G06980.2 (Glycine max), 5'ss of exon 5
lower sequence: PP1S189_118V6.1 (Physcomitrella patens), 5'ss of exon 6
ACAATAAAGACAAATGTGATTGGAACACTGAACATGCTTGGTCTTGCTAAGCGTGTGGGAGCAAGgttatctctctttttcgaaatacaaaagttgatagcctataccatta-----ccatctgttgattttacaagtt---gtaattttgattgacag------
|| || ||||||||||||||||| || || ||||||||||| || ||||| || || || ||||||| | ||| | || || | | || | | | | || |||| | || || || | | || ||
ACCATCAAGACAAATGTGATTGGTACGCTCAACATGCTTGGACTCGCTAAACGAGTTGGTGCAAGgtgcaaaattctttgtatatcttgctctttaatttctcttgtcaccaggaaactggcagctggacttacgatttcatgttatgtatactgcaagtagctcMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193540711|gb|FK494361.1|FK494361EST: GTGATTGGAACACTGAACATGCTTGGTCTTGCTAAGCGTGTGGGAGCAAG GATTTTGCTTACATCTACTTCAGAAGTATATGGGGACCCTCTTGAGCATCC
genomic: GTGATTGGAACACTGAACATGCTTGGTCTTGCTAAGCGTGTGGGAGCAAGgttatctctc ... tgattgacagGATTTTGCTTACATCTACTTCAGAAGTATATGGGGACCCTCTTGAGCATCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACAATAAAGACAAATGTGATTGGAACACTGAACATGCTTGGTCTTGCTAAGCGTGTGGGAGCAAGgttatctctctttttcgaaatacaaaagttgatagcctataccattaccatctgttgattttacaagttgtaattttgattgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG