Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTTTGCTTACATCTACTTCAGAAGTATATGGGGACCCTCTTGAGCATCCACAACCAGAAAGCTATTGGGGCAATGTTAATCCTATTGgtacatacacatctcattctcaatccaaacttgtgtatcaacggcatcataatggggacaatgctaatttagctgagctcatcataatgttaacctcaat...

Basic information

species Glycine max
transcript GLYMA12G06980.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G06980.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 7
GATTTTGCTTACATCTACTTCAGAAGTATATGGGGACCCTCTTGAGCATCCACAACCAGAAAGCTATTGGGGCAATGTTAATCCTATTGgtacatacacatctcattctcaatccaaacttgtgtatcaacggcatcataatggggacaatgctaatttagctgagctcatcataatgttaacctcaat
||| ||||||||||| ||||||||||||||||| || |||||||||||||| ||| | || ||||||||||| |||||||| || || ||||  | ||  | ||||  |      |   |||| | | |     |  | ||    |  || |  ||   |     |   ||   |     || ||| ||
GATATTGCTTACATCAACTTCAGAAGTATATGGAGATCCTCTTGAGCATCCCCAAACTGAGAGCTATTGGGGAAATGTTAACCCAATAGgtatttgcatctttcatggttttcttaggtttgttttttatttaaaaaaaaaaaaaggaaaagaaaagaaaagaaggaaaataggatgaaaaatctctat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193540711|gb|FK494361.1|FK494361
EST:     TCTTGAGCATCCACAACCAGAAAGCTATTGGGGCAATGTTAATCCTATTG                         GAGTTCGGAGTTGTTATGATGAGGGCAAGCGTGTTGCAGAAACTTTGATGT
genomic: TCTTGAGCATCCACAACCAGAAAGCTATTGGGGCAATGTTAATCCTATTGgtacatacac ... gtgtgcacagGAGTTCGGAGTTGTTATGATGAGGGCAAGCGTGTTGCAGAAACTTTGATGT
EST: gi|213606684|gb|DB959073.1|DB959073
EST:     TCTTGAGCATCCACAACCAGAAAGCTATTGGGGCAATGTTAATCCTATTG                         GAGTTCGGAGTTGTTATGATGAGGGCAAGCGTGTTGCAGAAACTTTGATGT
genomic: TCTTGAGCATCCACAACCAGAAAGCTATTGGGGCAATGTTAATCCTATTGgtacatacac ... gtgtgcacagGAGTTCGGAGTTGTTATGATGAGGGCAAGCGTGTTGCAGAAACTTTGATGT
EST: gi|209703510|gb|BW656548.1|BW656548
EST:     TCTTGAGCATCCACAACCAGAAAGCTATTGGGGCAATGTTAATCCTATTG                         GAGTTCGGAGTTGTTATGATGAGGGCAAGCGTGTTGCAGAAACTTTGATGT
genomic: TCTTGAGCATCCACAACCAGAAAGCTATTGGGGCAATGTTAATCCTATTGgtacatacac ... gtgtgcacagGAGTTCGGAGTTGTTATGATGAGGGCAAGCGTGTTGCAGAAACTTTGATGT