1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TGCTCTGATTGCTGCAAGAGGTGAAGGAACACAAGTCACAATGGAACATTTTGAGGCAGCCATTGATAGGATCATTGGTGGTTTGGAAAAGAGGAACAAGgtatgtctttttaagttttatattactattaggtaggcttgtgagatgggaggggtggagctgggtgttttttagtttataaaataagaatctgcatatc...
species | Glycine max |
transcript | GLYMA12G06530.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTGAGGCAGCCATTGATAGGATCATTGGTGGTTTGGAAAAGAGGAACAAG GTAATAAGCAAGCTGGAAAGGCGGACTGTTGCCTACCATGAAGCAGGCCATEST: gi|5606459|gb|AI900493.1|AI900493
genomic: TTGAGGCAGCCATTGATAGGATCATTGGTGGTTTGGAAAAGAGGAACAAGgtatgtcttt ... tcttaaccagGTAATAAGCAAGCTGGAAAGGCGGACTGTTGCCTACCATGAAGCAGGCCAT
EST: TTGAGGCAGCCATTGATAGGATCATTGGTGGTTTGGAAAAGAGGAACAAG GTAATAAGCAAGCTGGAAAGGCGGACTGTTGCCTACCATGAAGCAGGCCATEST: gi|7685136|gb|AW755784.1|AW755784
genomic: TTGAGGCAGCCATTGATAGGATCATTGGTGGTTTGGAAAAGAGGAACAAGgtatgtcttt ... tcttaaccagGTAATAAGCAAGCTGGAAAGGCGGACTGTTGCCTACCATGAAGCAGGCCAT
EST: TTGAGGCAGCCATTGATAGGATCATTGGTGGTTTGGAAAAGAGGAACAAG GTAATAAGCAAGCTGGAAAGGCGGACTGTTGCCTACCATGAAGCAGGCCATEST: gi|208117393|gb|GD919091.1|GD919091
genomic: TTGAGGCAGCCATTGATAGGATCATTGGTGGTTTGGAAAAGAGGAACAAGgtatgtcttt ... tcttaaccagGTAATAAGCAAGCTGGAAAGGCGGACTGTTGCCTACCATGAAGCAGGCCAT
EST: TTGAGGCAGCCATTGATAGGATCATTGGTGGTTTGGAAAAGAGGAACAAG GTAATAAGCAAGCTGGAAAGGCGGACTGTTGCCTACCATGAAGCAGGCCATEST: gi|23729875|gb|BU763043.1|BU763043
genomic: TTGAGGCAGCCATTGATAGGATCATTGGTGGTTTGGAAAAGAGGAACAAGgtatgtcttt ... tcttaaccagGTAATAAGCAAGCTGGAAAGGCGGACTGTTGCCTACCATGAAGCAGGCCAT
EST: GAAAAGAGGAACAAG GTAATAAGCAAGCTGGAAAGGCGGACTGTTGCCTACCATGAAGCAGGCCATEST: gi|22525362|gb|BU084173.1|BU084173
genomic: GAAAAGAGGAACAAGgtatgtcttt ... tcttaaccagGTAATAAGCAAGCTGGAAAGGCGGACTGTTGCCTACCATGAAGCAGGCCAT
EST: TTGAGGCAGCCATTGATAGGATCATTGGTGGTTTGGAAAAGAGGAACAAG GTAATAAGCAAGCTGGAAAGGCGGACTGTTGCCTACCATGAAGCAGGCCATEST: gi|12688251|gb|BG154587.1|BG154587
genomic: TTGAGGCAGCCATTGATAGGATCATTGGTGGTTTGGAAAAGAGGAACAAGgtatgtcttt ... tcttaaccagGTAATAAGCAAGCTGGAAAGGCGGACTGTTGCCTACCATGAAGCAGGCCAT
EST: TTGAGGCAGCCATTGATAGGATCATTGGTGGTTTGGAAAAGAGGAACAA- GTAATAAGCAAGCTGGAAAGGCGGACTGTTGCCTACCATGAAGCAGGCCAT
genomic: TTGAGGCAGCCATTGATAGGATCATTGGTGGTTTGGAAAAGAGGAACAAGgtatgtcttt ... tcttaaccagGTAATAAGCAAGCTGGAAAGGCGGACTGTTGCCTACCATGAAGCAGGCCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTCTGATTGCTGCAAGAGGTGAAGGAACACAAGTCACAATGGAACATTTTGAGGCAGCCATTGATAGGATCATTGGTGGTTTGGAAAAGAGGAACAAGgtatgtctttttaagttttatattactattaggtaggcttgtgagatgggaggggtggagctgggtgttttttagtttataaaataagaatctgcatatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggggtgg