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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAATGTGTCCCTGAAGATGCAATCCACTTTATTGTGTCAACATTTTTTGATCAAGTTGTGACACTCTCAACCCATCCATATGGTTGCCGGGTGATACAGgtaagttctcttcactgcttatgttactcttataatgtaccttagatcatttgtcatataaaatacgttctacgcgacag

Basic information

species Glycine max
transcript GLYMA12G06450.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G06450.3 (Glycine max), 5'ss of exon 6
lower sequence: Vv06s0004g05100.t01 (Vitis vinifera), 5'ss of exon 5
TGAATGTGTCCCTGAAGATGCAATCCACTTTATTGTGTCAACATTTTTTGATCAAGTTGTGACACTCTCAACCCATCCATATGGTTGCCGGGTGATACAGgtaagtt-ctcttcactgcttatgttactcttataatgtaccttagatcatttgtcatataaaatacgttctacgcgacag----------------------
||||||||| ||||||||||| || || |||||  | |||||||| |||||||| |||||||| |||||||||||||||||||| || || ||||||||||| ||   || || | ||||||| ||  |   ||  ||    ||  ||     | ||||   || | || || | | | |                       
TGAATGTGTTCCTGAAGATGCTATTCAGTTTATCATCTCAACATTCTTTGATCAGGTTGTGACCCTCTCAACCCATCCATATGGGTGTCGTGTGATACAGgttagaaactttttattgcttatctt--ttacatcttgagggttcaatttgaagacataaggaagaagtgcttc-caatatttttcataggcaaagatcaaat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207757923|gb|GD729159.1|GD729159
EST:     GCCGGGTGATACAG                         CGAGTGCTGGAACACTGCAAAGACCCTACAACACAACAGAAAGTTATGGAT
genomic: GCCGGGTGATACAGgtaagttctc ... tacgcgacagCGAGTGCTGGAACACTGCAAAGACCCTACAACACAACAGAAAGTTATGGAT
EST: gi|208030488|gb|GD828400.1|GD828400
EST:     GCCGGGTGATACAG                         CGAGTGCTGGAACACTGCAAAGACCCTACAACACAACAGAAAGTTATGGAT
genomic: GCCGGGTGATACAGgtaagttctc ... tacgcgacagCGAGTGCTGGAACACTGCAAAGACCCTACAACACAACAGAAAGTTATGGAT
EST: gi|193708510|gb|FK644958.1|FK644958
EST:     ATCAAGTTGTGACACTCTCAACCCATCCATATGGTTGCCGGGTGATACAG                         CGAGTGCTGGAACACTGCAAAGACCCTACAACACAACAGAAAGTTATGGAT
genomic: ATCAAGTTGTGACACTCTCAACCCATCCATATGGTTGCCGGGTGATACAGgtaagttctc ... tacgcgacagCGAGTGCTGGAACACTGCAAAGACCCTACAACACAACAGAAAGTTATGGAT