Sequence
atgc intronic sequence ATGC exonic sequenceATTTGAACCACTTCCAATATCAGCTATCTCAGGGACTGGAACTGGAGAGCTTCTTGACCTTGTTTGTTCTGGCCTACAGAAAATTGAGgtttgttttctatgaaggctgcattctcttctgtatatatcattgacaatgggtaaatttagcttttttctacttttatgttgcaagcaagttgatttga...
Basic information
species | Glycine max |
transcript | GLYMA12G06150.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G06150.1 (Glycine max), 5'ss of exon 6
lower sequence: AT3G12080.2 (Arabidopsis thaliana), 5'ss of exon 6
ATTTGAACCACTTCCAATATCAGCTATCTCAGGGACTGGAACTGGAGAGCTTCTTGACCTTGTTTGTTCTGGCCTACAGAAAATTGAGgtttgttttctatgaaggctgcattctcttctgtatatatcattgacaatgggtaaatttagcttttttctacttttatgttgcaagcaagttgatttga-------
|| ||| | || || || || | || || |||||||| |||||||| ||||| |||||||||||||||||| ||| | ||||||||| | ||| | |||| | | | ||| | | || | || | | | | || || | ||
GTTCACACCTATCCCTATCTCTGCATTGTCGGGAACTGGAACAGGAGAGCTGCTTGATCTTGTTTGTTCTGGCCTAATTAAACTCGAGgtttgt-------aatggcctttctttctttcagaaacaaatttgtgcaggaatatgagatattggcaaatagtcctttatgaagagagttctgtatcgaagtatag
upper sequence: GLYMA12G06150.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv06s0004g02070.t01 (Vitis vinifera), 5'ss of exon 7
ATTTGAACCACTTCCAATATCAGCTATCTCAGGGACTGGAACTGGAGAGCTTCTTGACCTTGTTTGTTCTGGCCTACAGAAAATTGAGgt-ttgtt--ttctatgaaggctgcattctcttctgtatatatcattgacaatgggtaaat-ttagcttttttctacttttatgttgcaagcaagttgatttga
||| |||||||| ||||| ||| | || |||||||||||||||||||| ||||| ||||||||||| || || | ||||| ||||| |||| ||| || ||| | | | | || | | || | ||| | || | | | ||| | || | || |
GTTTACTCCACTTCCCATATCTGCTGTATCTGGGACTGGAACTGGAGAGCTGCTTGATCTTGTTTGTTCAGGATTAAAAAAAATAGAGgtattgtaaattccatacttcctgtttcattatgggaatctggtcatatcaggatttcaatatcaggctatcattgaatttttatttttatcagaaacaa----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|6482378|gb|AW201641.1|AW201641EST: GAACTGGAGAGCTTCTTGACCTTGTTTGTTCTGGCCTACAGAAAATTGAG GAATCTAATAATCTTGATGAAGAAGATTATGTTCCAGCAATTTCAATTGTT
genomic: GAACTGGAGAGCTTCTTGACCTTGTTTGTTCTGGCCTACAGAAAATTGAGgtttgttttc ... taacctatagGAATCTAATAATCTTGTTGAAGAAGATTATGTTCCAGCAATTTCAATTGTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTTGAACCACTTCCAATATCAGCTATCTCAGGGACTGGAACTGGAGAGCTTCTTGACCTTGTTTGTTCTGGCCTACAGAAAATTGAGgtttgttttctatgaaggctgcattctcttctgtatatatcattgacaatgggtaaatttagcttttttctacttttatgttgcaagcaagttgatttga
- - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - GAGCTT