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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCATTCGTGTTGGTCTTAACCTTGCACTGGCCATTGCTCTGCACAATATCCCAGAGgtataaattttggtcatgtggcaaagccctttagactatatgctataattttatttggtgaaaatataacaataagagaaaaccgtcacaccttataaaattttatgccttttctctgaatattttagtttcattttgttttgtttttattgtaaattttttcctccacataaacaataacaatctgctttccag

Basic information

species Glycine max
transcript GLYMA12G06060.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G06060.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv06s0004g01860.t01 (Vitis vinifera), 5'ss of exon 7
GGCATTCGTGTTGGTCTTAACCTTGCACTGGCCATTGCTCTGCACAATATCCCAGAGgtataaattttggtcatgtggcaaagccctttagactatatgctataattttatttggtgaaaatataacaataagagaaaaccgtcacaccttataaaattttatgccttttctctgaatattttagtttcattttgttttgtttttattgtaaattttttcctccacataaacaataacaatctgctttccag
||| |||| ||||| || ||| | ||||||||||||||| ||||||| ||||||||||||   | | | ||| ||| | | | | || ||   | | |    |  ||  |     ||          ||     | || | |         ||| || |                                                                                             
GGCCTTCGGGTTGGACTAAACTTGGCACTGGCCATTGCTTTGCACAACATCCCAGAGgta-ggactgttgtcttgtagtataactctgtatgttgtgtatactgtttagaagctatgggttctcttaaacgcttgcaatctgctgtga---atagaagtgg-------------------------------------------------------------------------------------------

upper sequence: GLYMA12G06060.1 (Glycine max), 5'ss of exon 6
lower sequence: EFJ32545 (Selaginella moellendorffii), 5'ss of exon 7
GGCATTCGTGTTGGTCTTAACCTTGCACTGGCCATTGCTCTGCACAATATCCCAGAGgtataaattttggtcatgtggcaaagccctttagactatatgctataattttatttggtgaaaatataacaataagagaaaaccgtcacaccttataaaattttatgccttttctctgaatattttagtttcattttgttttgtttttattgtaaattttttcctccacataaacaataacaatctgctttccag
|||||||| |||||  | | | | || |||||||||||| ||||||| ||||||||||||   ||||  || |||       |  ||||   || |     |  | ||| |||                                                                                                                                           
GGCATTCGAGTTGGCATAAGCTTAGCCCTGGCCATTGCTTTGCACAACATCCCAGAGgta---atttaagttatg-------gttcttt---cttttgctcaacagtttgtttaacag--------------------------------------------------------------------------------------------------------------------------------------

upper sequence: GLYMA12G06060.1 (Glycine max), 5'ss of exon 6
lower sequence: EFJ16604 (Selaginella moellendorffii), 5'ss of exon 7
GGCATTCGTGTTGGTCTTAACCTTGCACTGGCCATTGCTCTGCACAATATCCCAGAGgtataaattttggtcatgtggcaaagccctttagactatatgctataattttatttggtgaaaatataacaataagagaaaaccgtcacaccttataaaattttatgccttttctctgaatattttagtttcattttgttttgtttttattgtaaattttttcctccacataaacaataacaatctgctttccag
|||||||| |||||| | | | | || |||||||||||| ||||||| ||||||||||||   ||||  || |||       |  |||||   | |   | | | |||  |||                                                                                                                                           
GGCATTCGAGTTGGTATAAGCTTAGCCCTGGCCATTGCTTTGCACAACATCCCAGAGgta---atttaagttatg-------gttctttatttt-tgctcaacagttt-gtttaacag--------------------------------------------------------------------------------------------------------------------------------------