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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTAGCAACTATGAGAAGGAATTGGATGAAATGAAACACATGACGAGACAAGAATTTGTTGCCGCCATTAGAAGgtgattaatgaagagatacatgtataacgcatatatacatggtcaataatatatatagtgaaataatagtcagattaagtagtgaattttagggtatgca...

Basic information

species Glycine max
transcript GLYMA12G06010.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G06010.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv06s0004g01800.t01 (Vitis vinifera), 5'ss of exon 5
ATTAGCAACTATGAGAAGGAATTGGATGAAATGAAACACATGACGAGACAAGAATTTGTTGCCGCCATTAGAAGgtgattaatgaagagatacatgtataacgcata--tatacatggtcaataatatatatagtgaaataatagtcag--attaagtagtgaattttagggtatgca------
|| || |||||||||| |||| |||| || ||||| |||||||| |||||||||||||| ||| |||||||||||| |   |   |     ||    | |||   ||   ||  ||    ||||   ||  |    ||    |  | ||  ||||| || |   |||| ||  ||| |      
ATCAGTAACTATGAGAGGGAACTGGAGGAGATGAAGCACATGACCAGACAAGAATTTGTGGCCTCCATTAGAAGgtaagggacagatctccaccca-agaacttgtagtcattaattaaaaataccttaccttacaaacctgttattagttattaattaatctctttttggaaatgaatttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26045627|gb|CA783156.1|CA783156
EST:     GATGAAATGAAACACATGACGAGACAAGAATTTGTTGCCGCCATTAGAAG                         GAAAAGCAGTGGTTTCTCCAGGGGTGCATCAATGTATCGTGGAGTTACAAG
genomic: GATGAAATGAAACACATGACGAGACAAGAATTTGTTGCCGCCATTAGAAGgtgattaatg ... tgatttgcagGAAAAGCAGTGGTTTCTCCAGGGGTGCATCAATGTATCGTGGAGTTACAAG