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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTCTGCCAAATGTTTATCATAAATGCTGGCCCTGGATTTAGGTTGCTATGGAACACTGTCAAGTCTTTCCTTGATCCCAAGACAACTTCAAAGATTCATgtatgtagaaatgctatattgtagctgcctaaggctcttttcatgatggcttatggctgctgacattgcttggtgcctctatggaaatattacttag

Basic information

species Glycine max
transcript GLYMA12G04460.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G04460.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G073571_T02 (Zea mays), 5'ss of exon 7
TCTCTGCCAAATGTTTATCATAAATGCTGGCCCTGGATTTAGGTTGCTATGGAACACTGTCAAGTCTTTCCTTGATCCCAAGACAACTTCAAAGATTCATgtatgtagaaatgctatattgtagctgcctaaggctcttttcatgatggcttatggctgctgacattgcttggtgcctc---tatggaaatattacttag
||| | ||||||||||||| | |||||||| || || ||  |||| |||||||||||||| ||||| |||||||||||||| || ||  | ||||| |||||  ||    |   |    || || |  |  |  |     |    |    || ||  || || ||||| ||  || |||   |||    || ||  ||||
TCTATACCAAATGTTTATCGTCAATGCTGGTCCGGGCTTCCGGTTACTATGGAACACTGTGAAGTCCTTCCTTGATCCCAAAACGACCGCCAAGATACATgtgagtttccag--tgaggtgcagattacagaaacagaact----actttttttgcttgatggcattgattaatgtctcagatattcttatgtt-tttag

upper sequence: GLYMA12G04460.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G073571_T03 (Zea mays), 5'ss of exon 6
TCTCTGCCAAATGTTTATCATAAATGCTGGCCCTGGATTTAGGTTGCTATGGAACACTGTCAAGTCTTTCCTTGATCCCAAGACAACTTCAAAGATTCATgtatgtagaaatgctatattgtagctgcctaaggctcttttcatgatggcttatggctgctgacattgcttggtgcctc---tatggaaatattacttag------
||| | ||||||||||||| | |||||||| || || ||  |||| |||||||||||||| ||||| |||||||||||||| || ||  | ||||| |||||  ||    |   |    || || |  |  |  |     |    |    || ||  || || ||||| ||  || |||   |||    || ||  |  |      
TCTATACCAAATGTTTATCGTCAATGCTGGTCCGGGCTTCCGGTTACTATGGAACACTGTGAAGTCCTTCCTTGATCCCAAAACGACCGCCAAGATACATgtgagtttccag--tgaggtgcagattacagaaacagaact----actttttttgcttgatggcattgattaatgtctcagatattcttatgtttttaggttcttg

upper sequence: GLYMA12G04460.1 (Glycine max), 5'ss of exon 6
lower sequence: AT2G21520.1 (Arabidopsis thaliana), 5'ss of exon 5
TCTCTGCCAAATGTTTATCATAAATGCTGGCCCTGGATTTAGGTTGCTATGGAACACTGTCAAGTCTTTCCTTGATCCCAAGACAACTTCAAAGATTCATgtatgtagaaatgctatattgtagct--gcctaaggctcttttcatgatggct-tatggctgctgacattgcttggtgcctctatggaaatattacttag
||||  |||||||||||| || ||||| || |||||||||||| | || |||||||||||||||   || ||||| || |||||| || | || ||||||||||| ||| || |||  || || ||     |||   |||| || |  ||  | ||| |      | || |  |  | |   | |  |  ||        
TCTCCACCAAATGTTTATTATCAATGCAGGGCCTGGATTTAGGCTACTCTGGAACACTGTCAAGAGCTTTCTTGACCCTAAGACATCTGCTAAAATTCATgtatg-agagat-ctaagttatatctctatttaaaagtcttgtctt--tgattatatagaattcaatatggacta-ttctattgtttatgtag-------

upper sequence: GLYMA12G04460.1 (Glycine max), 5'ss of exon 6
lower sequence: AT4G39170.2 (Arabidopsis thaliana), 5'ss of exon 2
TCTCTGCCAAATGTTTATCATAAATGCTGGCCCTGGATTTAGGTTGCTATGGAACACTGTCAAGTCTTTCCTTGATCCCAAGACAACTTCAAAGATTCATgtatgtagaaatgctatattgtagctgcctaaggctcttttcatgatggctt-----------atggctgctgacattgcttggtgcctctatggaaatattact-tag
 |||  ||||||||||||||| ||||| || || |||||  |  |||| |||| ||||||||||  ||| || || ||||| || ||||| |||||||||||||||  | |     | |||    |   |    | || |   | |||||||           |   || |||| |||  |   || || |       | ||| | |||
CCTCCACCAAATGTTTATCATCAATGCAGGGCCCGGATTCCGTCTGCTTTGGAGCACTGTCAAGAGTTTTCTAGACCCCAAAACGACTTCTAAGATTCATgtatgttaatacatgtttttgctttttatttgtac-ctctagttaatggcttcccttaattaaactactcctgagattcatcattgactgttcaacttttttaatatag

upper sequence: GLYMA12G04460.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv03s0038g04470.t01 (Vitis vinifera), 5'ss of exon 7
TCTCTGCCAAATGTTTATCATAAATGCTGGCCCTGGATTTAGGTTGCTATGGAACACTGTCAAGTCTTTCCTTGATCCCAAGACAACTTCAAAGATTCATgtatgtagaaatgctatattgtagctgcctaaggctctt---ttcatgatggctt--atggctgctgacattgcttggtgcctc---tatggaaatattacttag
|||||||||||||||||| || |||||||| ||||| |||||| |||| ||||||||||| ||| |||| || |||||||| |||||||| |||||||||||  ||  ||||| | |  |     |         || |   ||| |   | |||  |    |||||  ||  ||| ||  ||    | ||||| |  | || ||
TCTCTGCCAAATGTTTATTATCAATGCTGGTCCTGGCTTTAGGCTGCTCTGGAACACTGTAAAGACTTTTCTAGATCCCAAAACAACTTCCAAGATTCATgtgcgtgaaaatgtttttcttctattattcttacttcataaattcgtagagccttcaaaatatgctg-tataactttgtctctggggtttggaatttctcctcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193481751|gb|FK446870.1|FK446870
EST:     GGAACACTGTCAAGTCTTTCCTTGATCCCAAGACAACTTCAAAGATTCAT                         GTTCTCGGAAACAAGTACCAAAGCAAATTGTTTGAAATAATTGATGCCAG
genomic: GGAACACTGTCAAGTCTTTCCTTGATCCCAAGACAACTTCAAAGATTCATgtatgtagaa ... tattacttagGTTCTCGGAAACAAGTACCAAAGCAAATTGTTTGAAATAATTGATGCCAG
EST: gi|208307684|gb|GE107166.1|GE107166
EST:     GGAACACTGTCAAGTCTTTCCTTGATCCCAAAACAACTTCAAAGATTCAT                         GTTCTCGGAAACAAGTACCAAAGCGAATTGCTTGAAATAATTGATGCCAG
genomic: GGAACACTGTCAAGTCTTTCCTTGATCCCAAGACAACTTCAAAGATTCATgtatgtagaa ... tattacttagGTTCTCGGAAACAAGTACCAAAGCAAATTGTTTGAAATAATTGATGCCAG
EST: gi|193399516|gb|FK363069.1|FK363069
EST:     GGAACACTGTCAAGTCTTTCCTTGATCCCAAGACAACTTCAAAGATTCAT                         GTTCTCGGAAACAAGTACCAAAGCAAATTGTTTGAAATAATTGATGCCAG
genomic: GGAACACTGTCAAGTCTTTCCTTGATCCCAAGACAACTTCAAAGATTCATgtatgtagaa ... tattacttagGTTCTCGGAAACAAGTACCAAAGCAAATTGTTTGAAATAATTGATGCCAG
EST: gi|22524635|gb|BU083446.1|BU083446
EST:     CTTGATCCCAAAACAACTTCAAAGATTCAT                         GTTCTCGGAAACAAGTACCAAAGCAAATTGCTTGAAATAATTGATGCCAG
genomic: CTTGATCCCAAGACAACTTCAAAGATTCATgtatgtagaa ... tattacttagGTTCTCGGAAACAAGTACCAAAGCAAATTGTTTGAAATAATTGATGCCAG