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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGAGGAGCTGAGAAAGCTTATCGGTGCTCCAGTTTACATTGAATGTAGTTCAAAAACGCAACAGgtacatacatgttctttgaatcttttgaaagttctgaaggttaaaggaagtcatgaccttattgatgttagcctttgtatacag

Basic information

species Glycine max
transcript GLYMA12G03660.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G03660.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv03s0038g02380.t01 (Vitis vinifera), 5'ss of exon 7
GGTGAGGAGCTGAGAAAGCTTATCGGTGCTCCAGTTTACATTGAATGTAGTTCAAAAACGCAACAGgtacatacatgttctttgaatcttttgaaagttctgaaggttaaaggaagtcatgaccttattgatgttagcctttgtatacag-----------------
|| ||||| ||||||||||| || || ||||| | |||||||||||||||||||||||| || |||||   || || || ||    | |  ||| | |  | |      |||   ||||| |||||     | ||| |  |  |||                     
GGAGAGGAACTGAGAAAGCTGATTGGAGCTCCTGCTTACATTGAATGTAGTTCAAAAACACAGCAGgttggtatatcttattcatgt-tactgagaatcgttact-cagaagtttgtcattacctt--cattattaactgtgatatgtgttcccccttgtaatacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208044920|gb|GD840154.1|GD840154
EST:     AGCTTATCGGTGCTCCAGTTTACATTGAATGTAGTTCAAAAACGCAACAG                         AATGTGAAGGCTGTTTTTGATGCGGCCATCAAGGTAGTTCTCCAGCCCCCA
genomic: AGCTTATCGGTGCTCCAGTTTACATTGAATGTAGTTCAAAAACGCAACAGgtacatacat ... ttgtatacagAATGTGAAGGCTGTTTTTGATGCGGCCATCAAGGTAGTTCTCCAGCCCCCA
EST: gi|298171505|gb|HO016537.1|HO016537
EST:     AGCTTATCGGTGCTCCAGTTTACATTGAATGTAGTTCAAAAACGCAACAG                         AATGTGAAGGCTGTTTTTGATGCGGCCATCAAGGTAGTTCTCCAGCCCCCA
genomic: AGCTTATCGGTGCTCCAGTTTACATTGAATGTAGTTCAAAAACGCAACAGgtacatacat ... ttgtatacagAATGTGAAGGCTGTTTTTGATGCGGCCATCAAGGTAGTTCTCCAGCCCCCA
EST: gi|192329145|gb|FK021132.1|FK021132
EST:     AGCTTATCGGTGCTCCAGTTTACATTGAATGTAGTTCAAAAACGCAACAG                         AATGTGAAGGCTGTTTTTGATGCGGCCATCAAGGTAGTTCCCCAGCCCCCA
genomic: AGCTTATCGGTGCTCCAGTTTACATTGAATGTAGTTCAAAAACGCAACAGgtacatacat ... ttgtatacagAATGTGAAGGCTGTTTTTGATGCGGCCATCAAGGTAGTTCTCCAGCCCCCA
EST: gi|193463924|gb|FK427848.1|FK427848
EST:     TTTACATTGAATGTAGTTCAAAAACGCAACAG                         AATGTGAAGGCTGTTTTTGATGCGGCCATCAAGGTAGTTCTCCAGCCCCCA
genomic: TTTACATTGAATGTAGTTCAAAAACGCAACAGgtacatacat ... ttgtatacagAATGTGAAGGCTGTTTTTGATGCGGCCATCAAGGTAGTTCTCCAGCCCCCA
EST: gi|58014286|gb|CX701028.1|CX701028
EST:     AGCTTATCGGTGCTCCAGTTTACATTGAATGTAGTTCAAAAACGCAACAG                         AATGTGAAGGCTGTTTTTGATGCGGCCATCAAGGTAGTTCTCCAGCCCCCA
genomic: AGCTTATCGGTGCTCCAGTTTACATTGAATGTAGTTCAAAAACGCAACAGgtacatacat ... ttgtatacagAATGTGAAGGCTGTTTTTGATGCGGCCATCAAGGTAGTTCTCCAGCCCCCA
EST: gi|58020948|gb|CX707690.1|CX707690
EST:     AGCTTATCGGTGCTCCAGTTTACATTGAATGTAGTTCAAAAACGCAACAG                         AATGTGAAGGCTGTTTTTGATGCGGCCATCAAGGTAGTTCTCCAGCCCCCA
genomic: AGCTTATCGGTGCTCCAGTTTACATTGAATGTAGTTCAAAAACGCAACAGgtacatacat ... ttgtatacagAATGTGAAGGCTGTTTTTGATGCGGCCATCAAGGTAGTTCTCCAGCCCCCA
EST: gi|151401174|gb|EV270988.1|EV270988
EST:     AGCTTATCGGTGCTCCAGTTTACATTGAATGTAGTTCAAAA-CGCAACAG                         AATGTGAAGGCTGTTTTTGATGCGG
genomic: AGCTTATCGGTGCTCCAGTTTACATTGAATGTAGTTCAAAAACGCAACAGgtacatacat ... ttgtatacagAATGTGAAGGCTGTTTTTGATGCGG
EST: gi|151405308|gb|EV275122.1|EV275122
EST:     AGCTTATCGGTGCTCCAGTTTACATTGAATGTAGTTCAAAAACGCAACAG                         AATGTGAAGGCTGTTTTTGATGCGGCCATCAAGGTAGTTCTCCAGCCCCCA
genomic: AGCTTATCGGTGCTCCAGTTTACATTGAATGTAGTTCAAAAACGCAACAGgtacatacat ... ttgtatacagAATGTGAAGGCTGTTTTTGATGCGGCCATCAAGGTAGTTCTCCAGCCCCCA
EST: gi|18039985|gb|BM308279.1|BM308279
EST:     AGCTTATCGGTGCTCCAGTTTACATTGAATGTAGTTCAAAAACGCAACAG                         AATGTGAAGGCTGTTTTTGATGCGGCCATCAAGGTAGTTCTCCAGCCCCCA
genomic: AGCTTATCGGTGCTCCAGTTTACATTGAATGTAGTTCAAAAACGCAACAGgtacatacat ... ttgtatacagAATGTGAAGGCTGTTTTTGATGCGGCCATCAAGGTAGTTCTCCAGCCCCCA
EST: gi|308222701|gb|HO760611.1|HO760611
EST:     AGCTTATCGGTGCTCCAGTTTACATTGAATGTAGTTCAAAAACGCAACAG                         AATGTGAAGGCTGTTTTTGATGCGGCCATCAAGGTAGTTCTCCAGCCCCCA
genomic: AGCTTATCGGTGCTCCAGTTTACATTGAATGTAGTTCAAAAACGCAACAGgtacatacat ... ttgtatacagAATGTGAAGGCTGTTTTTGATGCGGCCATCAAGGTAGTTCTCCAGCCCCCA
EST: gi|58021197|gb|CX707939.1|CX707939
EST:     AGCTTATCGGTGCTCCAGTTTACATTGAATGTAGTTCAAAAACGCAACAG                         AATGTGAAGGCTGTTTTTGATGCGGCCATCAAGGTAGTTCTCCAGCCCCCA
genomic: AGCTTATCGGTGCTCCAGTTTACATTGAATGTAGTTCAAAAACGCAACAGgtacatacat ... ttgtatacagAATGTGAAGGCTGTTTTTGATGCGGCCATCAAGGTAGTTCTCCAGCCCCCA
EST: gi|192329144|gb|FK021131.1|FK021131
EST:     AGCTTATCGGTGCTCCAGTTTACATTGAATGTAGTTCAAAAACGCAACAG                         AATGTGAAGGCTGTTTTTGATGCGGCCATCAAGGTAGTTCCCCAGCCCCCA
genomic: AGCTTATCGGTGCTCCAGTTTACATTGAATGTAGTTCAAAAACGCAACAGgtacatacat ... ttgtatacagAATGTGAAGGCTGTTTTTGATGCGGCCATCAAGGTAGTTCTCCAGCCCCCA