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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCATCGGCAGCAGCAGTGTATTGGGCCTTTGGAGACATGCTTCTAAATCACTCCAATGCTTTTGCTCTCCTTCCTAAATCACCCTTCCGTGACATGGCTgtcattttaatgctcatccaccaggcaagcatgcccattcatttttcatctatataatattacatatgtattacaatgccttttgttgtatcctaattggattgaatgattaaattaatattgggaatttcattgcag

Basic information

species Glycine max
transcript GLYMA12G03490.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G03490.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv03s0038g02140.t01 (Vitis vinifera), 5'ss of exon 6
TCCATCGGCAGCAGCAGTGTATTGGGCCTTTGGAGACATGCTTCTAAATCACTCCAATGCTTTTGCTCTCCTTCCTAAATCACCCTTCCGTGACATGGCTgtcattttaatgctcatccaccaggcaagcatgcccattcatttttcatctatataatattacatatgtattacaatgccttttgttgtatcctaattggattgaatgattaaattaatattgggaatttcattgcag
    || || |||||||| |||||||| ||||| ||    ||||| | ||||||||| || ||||| |||||||| | ||||| |||| | |||||||||||| |  | ||||||||||||||||||| ||  || ||  |     ||| | |    |  |  || |  |||| | |     |    || | | | ||| |||   ||     | || |    |              
---GTCCGCGGCAGCAGTCTATTGGGCATTTGGTGATGCACTTCTCAGTCACTCCAACGCCTTTGCCCTCCTTCCCAGATCACACTTCAGGGACATGGCTGTCgtgctgatgctcatccaccaggcaaccac-cctatcaaacccccatattttctttgatcaattta-attaaattaataatcagagttttcgagttgtattcc-tgtgcggaatagtcacag--------------

upper sequence: GLYMA12G03490.1 (Glycine max), 5'ss of exon 6
lower sequence: EFJ34222 (Selaginella moellendorffii), 5'ss of exon 6
TCCATCGGCAGCAGCAGTGTATTGGGCCTTTGGAGACATGCTTCTAAATCACTCCAATGCTTTTGCTCTCCTTCCTAAATCACCCTTCCGTGACATGGCTgtcattttaatgctcatccaccaggcaagcatgcccattcatttttcatctatataatattacatatgtattacaatgccttttgttgtatcctaattggattgaatgattaaattaatattgggaatttcattgcag------------------------------
 || || ||  | ||||| || ||||| || || ||||  ||  | |   | ||||| ||  ||||||| ||||| ||     ||||||||||||| || |||||| | ||||||||||| ||||||||| |     ||  |  |  | || |    || | | | | | ||    | | | || || | |||  |   ||  ||| ||  ||| |  |     |  |||| ||                                  
CCCGTCCGCCACGGCAGTCTACTGGGCTTTCGGTGACAATCTCTTGACGAAATCCAACGCGCTTGCTCTTCTTCCCAAGAACGCCTTCCGTGACATCGCCgtcattctcatgctcatccatcaggcaagcttttttctt--tcctcgagctcttctttacttcttct-tcttcttcttcttcttcttct-tcccgagaagaaagaaagaggaaagtt-tgccaagtttttctttcttctgattcctcgattctcgcgatggaaaacag