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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTAAATATGGAATGGGGAAACTTTTGGTCATCTCATTTACCAAGAACATCTTATGATATTGATTTAGACTCTGAAAGCCCTAATCCAAATGATCAGgttaggttctgctgctcatgaatcctgttgcttgattcaagatgactcaaatcagattttgctaattttgatgtag

Basic information

species Glycine max
transcript GLYMA12G02450.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G02450.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G068913_T01 (Zea mays), 5'ss of exon 6
GTTGTAAATATGGAATGGGGAAACTTTTGGTCATCTCATTTACCAAGAACATCTTATGATATTGATTTAGACTCTGAAAGCCCTAATCCAAATGATCAGgttaggttctgctgctcatgaatcctg---ttgcttgattcaagatgactcaaatcagattttgctaattttgatgtag
|||||||| ||||||||||| || || |||||||| ||||| ||||||||  ||||||| ||     | ||   ||| |  |  ||||  ||||||||||| |   | ||       |   |  ||   | |||  |       | | |   |    |     || |  |||||  ||
GTTGTAAACATGGAATGGGGCAATTTCTGGTCATCACATTTGCCAAGAACTCCTTATGACATCTCCCTTGATGATGAGACGCAAAATCGCAATGATCAGgtgacactttgtgtaaagtatgttatggaatagctgtaccttttgttagtattactgaacaaatctgacattgatccag

upper sequence: GLYMA12G02450.1 (Glycine max), 5'ss of exon 6
lower sequence: AT3G20040.1 (Arabidopsis thaliana), 5'ss of exon 6
GTTGTAAATATGGAATGGGGAAACTTTTGGTCATCTCATTTACCAAGAACATCTTATGATATTGATTTAGACTCTGAAAGCCCTAATCCAAATGATCAGgttaggttctgctgctcatgaatcctgttgctt-gattcaagatgact-caaatcagattttgctaatt--ttgatgtag-----------------
|| || |||||||| |||||||||||||||||||||| | | |||||||| || |||||  |||| || ||  | || ||    ||| |||||||   ||| |  || |||      |   | || ||| || | || |  |||  | ||| | |  ||||   |  |  |  || | |                 
GTGGTCAATATGGAGTGGGGAAACTTTTGGTCATCTCGTCTGCCAAGAACTTCATATGACCTTGAGTTGGATGCAGAGAGTATGAATTCAAATGACATGgtaatattttgcgaagtttcctttctcttgtttcgttttatcatgttttcaagttattttttatcaggtaatcaatttggtgggtattgttttatag

upper sequence: GLYMA12G02450.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G50460.1 (Arabidopsis thaliana), 5'ss of exon 6
GTTGTAAATATGGAATGGGGAAACTTTTGGTCATCTCATTTACCAAGAACATCTTATGATATTGATTTAGACTCTGAAAGCCCTAATCCAAATGATCAGgttaggttctgctgctcatgaatcctgttgctt-gattcaagatgactcaaatcagattttgctaattttgatgtag-----------------------
|| ||||||||||| |||||||| |||||||| |||||||| || ||||| || ||||| ||||| || ||  | || ||  | ||| |||||||| | | ||   | |||    | |    ||||||  |  ||||    ||  |   | |    |||  | ||||   ||  |                        
GTGGTAAATATGGAGTGGGGAAATTTTTGGTCCTCTCATTTGCCTAGAACTTCGTATGACATTGACTTGGATGCAGAGAGTTCAAATGCAAATGAT-ATGgtaatctttgccatactt---ccctgtttttccgatttggtattgcgttattagtttttaaccaattaacatcaacatcatttggggtttcttacatag

upper sequence: GLYMA12G02450.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv06s0061g00040.t01 (Vitis vinifera), 5'ss of exon 6
GTTGTAAATATGGAATGGGGAAACTTTTGGTCATCTCATTTACCAAGAACATCTTATGATATTGATTTAGACTCTGAAAGCCCTAATCCAAATGATCAGgttaggttctgctgctcatgaatcctgttgcttgattcaagatgactcaaatcagattttgctaattttgatgtag
||||| || |||||||||||||| || |||||||| ||||| |||||||||||||| ||||||||||||||   ||| || ||||||||||||||||||||   ||||   | ||      |     | |    ||| || |||   ||   ||||||||    ||||| |  ||
GTTGTCAACATGGAATGGGGAAATTTCTGGTCATCACATTTGCCAAGAACATCTTACGATATTGATTTAGATGGTGATAGTCCTAATCCAAATGATCAGgtacagttcaattacttgcccttgtctcttcgatgttccag-tgaacaaatcaagattttgaggcttttgtttcag

upper sequence: GLYMA12G02450.1 (Glycine max), 5'ss of exon 6
lower sequence: PP1S401_23V6.1 (Physcomitrella patens), 5'ss of exon 5
GTTGTAAATATGGAATGGGGAAACTTTTGGTCATCTCATTTACCAAGAACATCTTATGATATTGATTTAGACTCTGAAAGCCCTAATCCAAATGATCAGgttaggttctgctgctcatgaatc------ctgttgcttgattcaagat--gactcaaatcagattttgctaattttgatgtag-------
||  | |||||||| |||||||||||||||||||| ||||| ||  | || | |   |||      || ||    || ||||   |||||   ||  | || |     |      |||||         ||||| ||   ||||   |  | ||     |||   ||  | || | | | | |       
GTGATCAATATGGAGTGGGGAAACTTTTGGTCATCACATTTGCCTCGGACCTATGTGGATGAGTTATTGGATAGCGAGAGCCTCCATCCAGGAGAATATgtaaaaacatctaaaccatgatctattctgctgttactattttcattgtctgccttgggacagcgcttaatgatgtggcttttgattgcag