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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCCTGTGGAGATATGGGAATTGGCAATGTTGCTTTCCATGGATCTTGCTCCATTGATGATGCAAATCATGAAGAAATCACAACTTTGCACTCAGTTCAAgtaatcaacaaattaatgtgacatggtccactatggaattttgggtcctgtatggtgacctgatgctctttatttaccattgacag

Basic information

species Glycine max
transcript GLYMA12G02310.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17401729|gb|BM178511.1|BM178511
EST:     CCATTGATGATGCAAATCATGAAGAAATCACAACTTTGCACTCAGTTCAA                         GACTATTTGACCACGAGGATGGAAGAGAGTCACAGAGGGAAAACTGATT
genomic: CCATTGATGATGCAAATCATGAAGAAATCACAACTTTGCACTCAGTTCAAgtaatcaaca ... ccattgacagGACTATTTGACCAAGAGGATGGAAGAGAGTCACAGAGGGAAAACTGATT
EST: gi|209719968|gb|BW659407.1|BW659407
EST:     CCATTGATGATGCAAATCATGAAGAAATCACAACTTTGCACTCAGTTCAA                         GACTATTTGACCA
genomic: CCATTGATGATGCAAATCATGAAGAAATCACAACTTTGCACTCAGTTCAAgtaatcaaca ... ccattgacagGACTATTTGACCA
EST: gi|5342509|gb|AI794793.1|AI794793
EST:     CATTGATGATGCAAATCATTGAGGAAATCACAACTNTGCACTCAGTTCAA                         GACTATTTGACCAAGAGGATGGAAGAGAGTCACAGAGGGAAAACTGATTTG
genomic: CATTGATGATGCAAATCAT-GAAGAAATCACAACTTTGCACTCAGTTCAAgtaatcaaca ... ccattgacagGACTATTTGACCAAGAGGATGGAAGAGAGTCACAGAGGGAAAACTGATTTG
EST: gi|10231486|gb|BE800374.1|BE800374
EST:     CCATTGATGATGCAAATCATGAAGAAATCACAACTTTGCACTCAGTTCAA                         GACTATTTGACCAAGAGGATGGAAGAGAGTCACAGAGGGAAAACTGA
genomic: CCATTGATGATGCAAATCATGAAGAAATCACAACTTTGCACTCAGTTCAAgtaatcaaca ... ccattgacagGACTATTTGACCAAGAGGATGGAAGAGAGTCACAGAGGGAAAACTGA
EST: gi|208299693|gb|GE097176.1|GE097176
EST:     CCATTGATGATGCAAATCATGAAGAAATCACAACTTTGCACTCAGTTCAA                         GACTATTTGACCAAGAGGATGGAAGAGAGTCACAGAGGGAAAACTGATTTG
genomic: CCATTGATGATGCAAATCATGAAGAAATCACAACTTTGCACTCAGTTCAAgtaatcaaca ... ccattgacagGACTATTTGACCAAGAGGATGGAAGAGAGTCACAGAGGGAAAACTGATTTG
EST: gi|192300938|gb|FG992998.1|FG992998
EST:     CCATTGATGATGCAAATCATGAAGAAATCACAACTTTGCACTCAGTTCAA                         GACTATTTGACCAAGAGGATGGAAGAGAGTCACAGAGGGAAA-CTGATTTG
genomic: CCATTGATGATGCAAATCATGAAGAAATCACAACTTTGCACTCAGTTCAAgtaatcaaca ... ccattgacagGACTATTTGACCAAGAGGATGGAAGAGAGTCACAGAGGGAAAACTGATTTG
EST: gi|208261337|gb|GE058245.1|GE058245
EST:     ATCACAACTTTGCACTCAGTTCAA                         GACTATTTGACCAAGAGGATGGAAGAGAGTCACAGAGGGAAAACTGATTTG
genomic: ATCACAACTTTGCACTCAGTTCAAgtaatcaaca ... ccattgacagGACTATTTGACCAAGAGGATGGAAGAGAGTCACAGAGGGAAAACTGATTTG
EST: gi|14990551|gb|BI316224.1|BI316224
EST:     CCATTGATGATGCAAATCATGAAGAAATCACAACTTTGCACTCAGTTCAA                         GACTATTTGACCAAGAGGATGGAAGAGAGTCACAGAG
genomic: CCATTGATGATGCAAATCATGAAGAAATCACAACTTTGCACTCAGTTCAAgtaatcaaca ... ccattgacagGACTATTTGACCAAGAGGATGGAAGAGAGTCACAGAG
EST: gi|192326972|gb|FK019234.1|FK019234
EST:     CCATTGATGATGCAAATCATGAAGAAATCACAACTTTGCACTCAGTTCAA                         GACTATTTGACCAAGAGGATGGAAGAGAGTCACAGAGGGAAAACTGATTTG
genomic: CCATTGATGATGCAAATCATGAAGAAATCACAACTTTGCACTCAGTTCAAgtaatcaaca ... ccattgacagGACTATTTGACCAAGAGGATGGAAGAGAGTCACAGAGGGAAAACTGATTTG
EST: gi|193364660|gb|FK330103.1|FK330103
EST:     CATTGATGATGCAAATCATGAAGAAATCACAACTTTGCACTCAGTTACAA                         GACTATTTGACC
genomic: CATTGATGATGCAAATCATGAAGAAATCACAACTTTGCACTCAGTT-CAAgtaatcaaca ... ccattgacagGACTATTTGACC
EST: gi|192324541|gb|FK016792.1|FK016792
EST:     CCATTGATGATGCAAATCATGAAGAAATCACGACTTTGCACTCAGTTCAA                         GACTATTTGACCAAGAGGATGGAAGAGAGTCACAGAGGGAAAACTGATTTG
genomic: CCATTGATGATGCAAATCATGAAGAAATCACAACTTTGCACTCAGTTCAAgtaatcaaca ... ccattgacagGACTATTTGACCAAGAGGATGGAAGAGAGTCACAGAGGGAAAACTGATTTG
EST: gi|151394250|gb|EV264121.1|EV264121
EST:     CCATTGATGATGCAAATCATGAAGAAATCACAACTTTGCACTCAGTTCAA                         GACTATTTGACCAAGAGGATGGAAGAGAGTCAC
genomic: CCATTGATGATGCAAATCATGAAGAAATCACAACTTTGCACTCAGTTCAAgtaatcaaca ... ccattgacagGACTATTTGACCAAGAGGATGGAAGAGAGTCAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGCCTGTGGAGATATGGGAATTGGCAATGTTGCTTTCCATGGATCTTGCTCCATTGATGATGCAAATCATGAAGAAATCACAACTTTGCACTCAGTTCAAgtaatcaacaaattaatgtgacatggtccactatggaattttgggtcctgtatggtgacctgatgctctttatttaccattgacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA