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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATGATAAATATTATCAAACACCACGAGTATGGCTTACTGGGTATGACGAGgtttgttttattctcttgattcttgtaactgtaatttagtcacttttgactagtctatatagggctatggcagagctactagaactagaattagcattac...

Basic information

species Glycine max
transcript GLYMA12G00830.4
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G00830.5 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os10g41110.1 (Oryza sativa), 5'ss of exon 6
GTATGATAAATATTATCAAACACCACGAGTATGGCTTACTGGGTATGACGAGgt---ttgttttattctcttgatt--cttgtaactgtaatttagtcacttttgactagtctatatagg--gctatggcagagctactagaactagaattagcattac
 |||||||||||||| ||||| ||||| || |||||||| || ||||| |||||   |  ||||   ||    | |  |||||  | ||  |  ||      |||| |  | ||  | |   | | | ||||                           
ATATGATAAATATTACCAAACCCCACGTGTCTGGCTTACCGGATATGATGAGgtaagtcattttgcccttagaagtgtcttgttgcagtcttgaagatgaagttgattcatttaatttgattgttgttgcag---------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31312555|gb|CD397758.1|CD397758
EST:     ATGATAAATATTATCNAACACCACGAGTATGGCTTACTGGGTATGACGAG                         TCAAGGATGCTTTTGCAACCAGAACTTGTTCTTGAAGATGTTAGTCAAGAC
genomic: ATGATAAATATTATCAAACACCACGAGTATGGCTTACTGGGTATGACGAGgtttgtttta ... cttgtggcagTCAAGGATGCTTTTGCAACCAGAACTTGTTCTTGAAGATGTTAGTCAAGAC
EST: gi|207721023|gb|GD702724.1|GD702724
EST:     TAAATATTATCAAACACCACGAGTATGGCTTACTGGGTATGACGAG                         TCAAGGATGCTTTTGCAACCAGAACTTGTTCTTGAAGATGTTAGTCAAGAC
genomic: TAAATATTATCAAACACCACGAGTATGGCTTACTGGGTATGACGAGgtttgtttta ... cttgtggcagTCAAGGATGCTTTTGCAACCAGAACTTGTTCTTGAAGATGTTAGTCAAGAC
EST: gi|193369407|gb|FK336669.1|FK336669
EST:     ATATTATCAAACACCACGAGTATAGCTTACTGGGTATGACGAG                         TCAAGGATGCTTTTGCAACCAGAACTTGTTCTTGAAGATGTTAGTCAAGAC
genomic: ATATTATCAAACACCACGAGTATGGCTTACTGGGTATGACGAGgtttgtttta ... cttgtggcagTCAAGGATGCTTTTGCAACCAGAACTTGTTCTTGAAGATGTTAGTCAAGAC
EST: gi|192330861|gb|FK021620.1|FK021620
EST:     ATGATAAATATTATCAAACACCACGAGTATGGCTTACTGGGTATGACGAG                         TCAAGGATGCTTTTGCAACCAGAACTTGTTCTTGAAGATGTTAGTCAAGAC
genomic: ATGATAAATATTATCAAACACCACGAGTATGGCTTACTGGGTATGACGAGgtttgtttta ... cttgtggcagTCAAGGATGCTTTTGCAACCAGAACTTGTTCTTGAAGATGTTAGTCAAGAC
EST: gi|193463512|gb|FK427436.1|FK427436
EST:     ATGATAAATATTATCAAACACCACGAGTATGGCTTACTGGGTATGACGAG                         TCAAGGATGCTTTTGCAACCAGAACTTGTTCTTGAAGTTGTTAGTCAAGAC
genomic: ATGATAAATATTATCAAACACCACGAGTATGGCTTACTGGGTATGACGAGgtttgtttta ... cttgtggcagTCAAGGATGCTTTTGCAACCAGAACTTGTTCTTGAAGATGTTAGTCAAGAC
EST: gi|9820599|gb|BE556109.1|BE556109
EST:     TATCAACCACCACGAGTATGGCTTACTGGGTATGACGAG                         TCAAGAATGCTTTTGCACCCCGANCTTGTTCTTGAAGATGTTAGTCAAGAC
genomic: TATCAAACACCACGAGTATGGCTTACTGGGTATGACGAGgtttgtttta ... cttgtggcagTCAAGGATGCTTTTGCAACCAGAACTTGTTCTTGAAGATGTTAGTCAAGAC
EST: gi|21887729|gb|BQ740942.1|BQ740942
EST:     ATGATAAATATTATCAAACACCACGAGTATGGCTTACTGGGTATGACGAG                         TCAAGGATGCTTTTGCAACCAGAACTTGTTCTTGAAGATGTTAGTCAAGAC
genomic: ATGATAAATATTATCAAACACCACGAGTATGGCTTACTGGGTATGACGAGgtttgtttta ... cttgtggcagTCAAGGATGCTTTTGCAACCAGAACTTGTTCTTGAAGATGTTAGTCAAGAC