1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TCTGGAGGAGCAGTTGGAGTAATCTCGGCATTAATGGTGGTTGAGATAAACAATGTAAAACAGCAGGAGCAGAAAAGATGCAAATACTGTCTTGGTACTGgtaagatttcaaaacctcttctgttatctgcatttttggagtcaaacgtcttaatggtggaactgaaggattttgtcatgcttcttggtattatcctttc...
species | Glycine max |
transcript | GLYMA12G00600.3 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CAATGTAAAACAGCAGGAGCAGAAAAGATGCAAATACTGTCTTGGTACTG GATATCTTGCATGTGCTCGCTGTTCAAGCACAGGAGCACTTGTTCTGATTGEST: gi|22525484|gb|BU084295.1|BU084295
genomic: CAATGTAAAACAGCAGGAGCAGAAAAGATGCAAATACTGTCTTGGTACTGgtaagatttc ... ttgctgtcagGATATCTTGCATGTGCTCGCTGTTCAAGCACAGGAGCACTTGTTCTGATTG
EST: CAATGTAAAACAGCAGGAGCAGAAAAGATGCAAATACTGTCTTGGTACTG GATATCTTGCATGTGCTCGCTGTTCAAGCACAGGAGCACTTGTTCTGATTGEST: gi|33389270|gb|CA852477.1|CA852477
genomic: CAATGTAAAACAGCAGGAGCAGAAAAGATGCAAATACTGTCTTGGTACTGgtaagatttc ... ttgctgtcagGATATCTTGCATGTGCTCGCTGTTCAAGCACAGGAGCACTTGTTCTGATTG
EST: CAATGTAAAACAGCAGGAGCAGAAAAGATGCAAATACTGTCTTGGTACTG GATATCTTGCATGTGCTCGCTGTTCAAGCACAGGAGCACTTGTTCTGATTGEST: gi|193717131|gb|FK652141.1|FK652141
genomic: CAATGTAAAACAGCAGGAGCAGAAAAGATGCAAATACTGTCTTGGTACTGgtaagatttc ... ttgctgtcagGATATCTTGCATGTGCTCGCTGTTCAAGCACAGGAGCACTTGTTCTGATTG
EST: CAATGTAAAACAGCAGGAGCAGAAAAGATGCAAATACTGTCTTGGCACTG GATATCTTGCATGTGCTCGCTGTTCAAGCACAGGAGCACTTGTTCTGATTGEST: gi|207827337|gb|GD799132.1|GD799132
genomic: CAATGTAAAACAGCAGGAGCAGAAAAGATGCAAATACTGTCTTGGTACTGgtaagatttc ... ttgctgtcagGATATCTTGCATGTGCTCGCTGTTCAAGCACAGGAGCACTTGTTCTGATTG
EST: GTAAAACAGCAGGAGCAGAAAAGATGCAAATACTGTCTTGGTACTG GATATCTTGCATGTGCTCGCTGTTCAAGCACAGGAGCACTTGTTCTGATTGEST: gi|120491318|gb|EH219485.1|EH219485
genomic: GTAAAACAGCAGGAGCAGAAAAGATGCAAATACTGTCTTGGTACTGgtaagatttc ... ttgctgtcagGATATCTTGCATGTGCTCGCTGTTCAAGCACAGGAGCACTTGTTCTGATTG
EST: CAATGTAAAACAGCAGGAGCAGAAAAGATGCAAATACTGTCTTGGTACTG GATATCTTGCATGTGCTCGCTGTTCAAGCACAGGAGCACTTGTTCTGATTGEST: gi|192307757|gb|FK001701.1|FK001701
genomic: CAATGTAAAACAGCAGGAGCAGAAAAGATGCAAATACTGTCTTGGTACTGgtaagatttc ... ttgctgtcagGATATCTTGCATGTGCTCGCTGTTCAAGCACAGGAGCACTTGTTCTGATTG
EST: CAATGTAAAACAGCAGGAGCAGAAAAGATGCAAATACTGTCTTGGTACTG GATATCTTGCATGTGCTCGCTGTTCAAGCA
genomic: CAATGTAAAACAGCAGGAGCAGAAAAGATGCAAATACTGTCTTGGTACTGgtaagatttc ... ttgctgtcagGATATCTTGCATGTGCTCGCTGTTCAAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTGGAGGAGCAGTTGGAGTAATCTCGGCATTAATGGTGGTTGAGATAAACAATGTAAAACAGCAGGAGCAGAAAAGATGCAAATACTGTCTTGGTACTGgtaagatttcaaaacctcttctgttatctgcatttttggagtcaaacgtcttaatggtggaactgaaggattttgtcatgcttcttggtattatcctttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG