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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGCTAGGCCTGGATTTTTTCACGATGACAAGTCACAGAAAAAAGgtacaggtgtgttatttctagcttatgtctatttttgttcaaatggaagttgatgtagatttatttttgtcatcccctattcctagcag

Basic information

species Glycine max
transcript GLYMA11G36990.2
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254316561|gb|GR828098.1|GR828098
EST:     GGTGCTAGGCCTGGATTTTTTCACGATGACA-GTCACAGAAAAAAG                         ATGCAACTCGTGACA-TGACTGGACATGTCCAAA-TGTGGCA
genomic: GGTGCTAGGCCTGGATTTTTTCACGATGACAAGTCACAGAAAAAAGgtacaggtgt ... ttcctagcagATGCAACTCGTGACAATGACTGGACATGTCCAAAATGTGGCA
EST: gi|193303415|gb|FK271601.1|FK271601
EST:     GGTGCTAGGCCTGGATTTTTTCACGATGACAAGTCACAGAAAAAAG                         ATGCAACTCGTGACAATGACTGGACATGTCCAAAATGTGGCAATGTCAATT
genomic: GGTGCTAGGCCTGGATTTTTTCACGATGACAAGTCACAGAAAAAAGgtacaggtgt ... ttcctagcagATGCAACTCGTGACAATGACTGGACATGTCCAAAATGTGGCAATGTCAATT
EST: gi|9899202|gb|BE608100.1|BE608100
EST:     GGTGCTAGGCCTGGATTTTT-CACGATGACA-GTCACAGAAAAA-G                         ATGCAACTCGTGA
genomic: GGTGCTAGGCCTGGATTTTTTCACGATGACAAGTCACAGAAAAAAGgtacaggtgt ... ttcctagcagATGCAACTCGTGA
EST: gi|18038859|gb|BM307153.1|BM307153
EST:     GTCACAGAAAAAAG                         ATGCAACACGTGACAATGACTGGACATGTCCAAAATGTGGCAATGTCAATT
genomic: GTCACAGAAAAAAGgtacaggtgt ... ttcctagcagATGCAACTCGTGACAATGACTGGACATGTCCAAAATGTGGCAATGTCAATT
EST: gi|13563438|gb|BG551584.1|BG551584
EST:     GGTGCTAGGCCTGGATTTTTTCACGATGACAAGTCACAGAAAAAAG                         ATGCAACTCGTGACAATGACTGGACATGTCCAAAATGTGGCAATGTCAATT
genomic: GGTGCTAGGCCTGGATTTTTTCACGATGACAAGTCACAGAAAAAAGgtacaggtgt ... ttcctagcagATGCAACTCGTGACAATGACTGGACATGTCCAAAATGTGGCAATGTCAATT
EST: gi|5058405|gb|AI736937.1|AI736937
EST:     AATGGGTGCTAGGCCTGGATTTTTTCACGATGACAAGTCACAGAAAAAAG                         ATGCAACTCGTGACAATGACTGGACATGTCCAAAATGTGGCAATGTCAATT
genomic: AATGGGTGCTAGGCCTGGATTTTTTCACGATGACAAGTCACAGAAAAAAGgtacaggtgt ... ttcctagcagATGCAACTCGTGACAATGACTGGACATGTCCAAAATGTGGCAATGTCAATT
EST: gi|192328140|gb|FK022849.1|FK022849
EST:     TTTTTTCACGATGACAAGTCACAGAAAAAAG                         ATGCAACTCGTGACAATGACTGGACATGTCCAAAATGTGGCAATGTCAATT
genomic: TTTTTTCACGATGACAAGTCACAGAAAAAAGgtacaggtgt ... ttcctagcagATGCAACTCGTGACAATGACTGGACATGTCCAAAATGTGGCAATGTCAATT
EST: gi|254316562|gb|GR828099.1|GR828099
EST:     GGTGCTAGGCCTGGATTTTTTCACGATGACAAGTCACAGAAAAAAG                         ATGCAACTCGTGACAATGACTGGACATGTCCAAAATGTGGCAATGTCAATT
genomic: GGTGCTAGGCCTGGATTTTTTCACGATGACAAGTCACAGAAAAAAGgtacaggtgt ... ttcctagcagATGCAACTCGTGACAATGACTGGACATGTCCAAAATGTGGCAATGTCAATT
EST: gi|192328242|gb|FK020461.1|FK020461
EST:     GGTGCTAGGCCTGGATTTTTTCACGATGACAAGTCACAGAAAAAAG                         ATGCAACTCGTGACAATGACTGGACATGTCCAAAATGTGGCAATGTCAATT
genomic: GGTGCTAGGCCTGGATTTTTTCACGATGACAAGTCACAGAAAAAAGgtacaggtgt ... ttcctagcagATGCAACTCGTGACAATGACTGGACATGTCCAAAATGTGGCAATGTCAATT
EST: gi|14011543|gb|BG726465.1|BG726465
EST:     GGTGCTAGGCCTGGATTTTTTCACGATGACAAGTCACTAGAAAAAAG                         ATGCAACTCGTGACAATGACTGGACATGTCCAAAATGTGGCAATGTCAAT
genomic: GGTGCTAGGCCTGGATTTTTTCACGATGACAAGTCAC-AGAAAAAAGgtacaggtgt ... ttcctagcagATGCAACTCGTGACAATGACTGGACATGTCCAAAATGTGGCAATGTCAAT
EST: gi|23729396|gb|BU762782.1|BU762782
EST:     GGTGCTAGGCCTGGATTTTTTCACGATGACAAGTCACAGAAAAAAG                         ATGCAACTCGTGACAATGACTGGACATGTCCAAAATGTGGCAATGTCAATT
genomic: GGTGCTAGGCCTGGATTTTTTCACGATGACAAGTCACAGAAAAAAGgtacaggtgt ... ttcctagcagATGCAACTCGTGACAATGACTGGACATGTCCAAAATGTGGCAATGTCAATT
EST: gi|254331208|gb|GR845787.1|GR845787
EST:     GGTGCTAGGCCTGGATTTTTTCACGATGACAAGTCACAGAAAAAAG                         ATGCAACTCGTGACAATGACTGGACATGTCCCAAATGTGGCAATGTCAATT
genomic: GGTGCTAGGCCTGGATTTTTTCACGATGACAAGTCACAGAAAAAAGgtacaggtgt ... ttcctagcagATGCAACTCGTGACAATGACTGGACATGTCCAAAATGTGGCAATGTCAATT