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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCTCAGAGTTCTTGACAAGGAGAAGCGTCAATCTCATTGTGCTGATGTTGGTTCTCACTTGATTCAGCGTTTAAGATCCCTGATGCAAATACATGACAgtacggttatcttgaatcttatataccaaaaagattcatgcttttgtgttgtgatatatttttattttttgatacatttgccttttcttatgtatctatatgaagcttcattacatagaacatacatatgccataattttgttgattattttgataatttttatatatgtccag

Basic information

species Glycine max
transcript GLYMA11G36000.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G36000.3 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os03g07570.1 (Oryza sativa), 5'ss of exon 6
GTGCTCAGAGTTCTTGACAAGGAGAAGCGTCAATCTCATTGTGCTGATGTTGGTTCTCACTTGATTCAGCGTTTAAGATCCCTGATGCAAATACATGACAgtacggtt----atcttgaatcttatataccaaaaagattcatgcttttgtgttgtgatatatttttattttttgatacatttgccttttcttatgtatctatatgaagcttcattacatagaacatacatatgccataattttgttgattattttgataatttttatatatgtccag
|||||||  ||||||||||||||||| || ||  | ||||||||||||||||| ||||| ||| |  | ||| ||| |   ||   |||||  ||||| ||||   |     |||||   |  ||| |    || |   ||     |||   || || |  |||     || ||| |  | |||    | | | |  ||||   | |   ||  | ||  | |  ||  ||     || | | |||  | |    | ||    | | | | |   |||
GTGCTCAAGGTTCTTGACAAGGAGAAACGCCAGGCACATTGTGCTGATGTTGGATCTCATTTGGTGAATCGTCTAAAAGAGCTCCAGCAAAAGCATGAAAgtaaaatctacaatctttggttatatttgtataacaacatcgccagtttacattctgcttgattcaacattgttgctttagttgatgatgccttt-catctgagtaacattt--tcactca-actatttattattgattaatctgtctaatcccatcatttggtctttctgttgtcag

upper sequence: GLYMA11G36000.3 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G124353_T01 (Zea mays), 5'ss of exon 6
GTGCTCAGAGTTCTTGACAAGGAGAAGCGTCAATCTCATTGTGCTGATGTTGGTTCTCACTTGATTCAGCGTTTAAGATCCCTGATGCAAATACATGACAgtacggttatcttgaatcttatataccaaaaagattcatgcttttgtgttgtgatatatttttattttttgatacatttgccttttcttatgtatctatatgaagcttcattacatagaacatacatatgccataattttgttgattattttgataatttttatatatgtccag
||||| |  ||||||||||||||||| || ||  | ||||||||||||||||| ||||||||| |  ||||| ||| ||| ||   | | |  || || ||||   || ||||  | |||    |         |  |  ||||  || |||   |  |||| | |     |  ||||||   |     |   || | |   |||     |      |  | | |   |||||                                         
GTGCTTAAGGTTCTTGACAAGGAGAAACGCCAGGCACATTGTGCTGATGTTGGATCTCACTTGTTGGAGCGTCTAAAATCGCTTCAGGAGAAGCACGAAAgtaaaatt-tctt--accttg---attctgttcgtctactctttc-tgctgtccaaccttttcact-----aaccatttgttctgagaaaaagatgtttcctaagtcagctactcctggccttgctcttgccag----------------------------------------

upper sequence: GLYMA11G36000.3 (Glycine max), 5'ss of exon 6
lower sequence: Vv07s0031g01330.t01 (Vitis vinifera), 5'ss of exon 6
GTGCTCAGAGTTCTTGACAAGGAGAAGCGTCAATCTCATTGTGCTGATGTTGGTTCTCACTTGATTCAGCGTTTAAGATCCCTGATGCAAATACATGACAgtacggttatcttgaatcttatatacc-aaaaagattcatgcttttgtgttgtgatatatttttattttttgatacatttgccttttcttatgtatctatatgaagcttcattacatagaacatacatatgccataattttgttgattattttgataatttttatatatgtccag
|||||||||||||| ||||||||||||||||||   |||||||||||||||||||| ||||||||| | ||||| ||| | ||   ||| | ||||||||||| | || |||||||      || ||  || | |||     |||    ||    |  ||| || |  || | |  |  |   |  | |    |   || |                                                                          
GTGCTCAGAGTTCTGGACAAGGAGAAGCGTCAAGAGCATTGTGCTGATGTTGGTTCACACTTGATTGAACGTTTGAGAGCTCTTCAGCAGAAACATGACAgtaagtttctcttgaactagtgatccccgaagaaatttccattttcccctttc--tggattcttgtccttagttttaagtttttagtatcgactggttacag-------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9820018|gb|BE555531.1|BE555531
EST:     TGGTTCTCACTTGATTCAGCGTTTAAGATCCCTGATGCAAATACATGACA                         TCATTGGAGATGTAAGAGGAAGAGGCTTAATGGTGGGGATAGAATNTGTCA
genomic: TGGTTCTCACTTGATTCAGCGTTTAAGATCCCTGATGCAAATACATGACAgtacggttat ... atatgtccagTCATTGGAGATGTAAGAGGAAGAGGCTTAATGGTGGGGATAGAATTTGTCA
EST: gi|193352675|gb|FK315965.1|FK315965
EST:     TGGTTCTCACTTGATTCAGCGTTTAAGATCCCTGATGCAAATACATGACA                         TCATTGGAGATGTAAGAGGAAGAGGCTTAATGGTGGGGATAGAATTTGTCA
genomic: TGGTTCTCACTTGATTCAGCGTTTAAGATCCCTGATGCAAATACATGACAgtacggttat ... atatgtccagTCATTGGAGATGTAAGAGGAAGAGGCTTAATGGTGGGGATAGAATTTGTCA