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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCGAGGAAGCATGAGTTCAGATGGGCAAAATTTCAGAGTTCCTGGAAGTTATATAAAGGGAATTGCCTGCGGAGGTCGACACAGTGCAGTAATCACAGgtaaatgtgtatcagtctattgtattctgtatctcaagttaatatatttctggacagtctgcattagtttctttggggaaccaaaagtgagaatatccac...

Basic information

species Glycine max
transcript GLYMA11G34470.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G34470.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv13s0019g02280.t01 (Vitis vinifera), 5'ss of exon 6
GCTCGAGGAAGCATGAGTTCAGATGGGCAAAATTTCAGAGTTCCTGGAAGTTATATAAAGGGAATTGCCTGCGGAGGTCGACACAGTGCAGTAATCACAGgtaaatgtgtatcagtctattgtattctgtatctcaagttaatatat----ttctggacagtctgcattagtttctttggggaaccaaaagtgagaatatccac
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GCTCGAGGAAATGTCAGTACGGAGGGACAGAGTCTGAGAGTCCCTGGAAGTTATGTGAAGTGGATTGCCTGTGGTGGCCGACACAGTGCAGTAATCACAGgtaaacatttgatgactcacttt-ttaattggttcaa-ttgctatatggtatttttggttgaccaaataagagttggtattttattgta--ttaaggtaccttt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193528819|gb|FK485595.1|FK485595
EST:     TTATATAAAGGGAATTGCCTGCGGAGGTCGACACAGTGCAGTAATCACAG                         ATGCTGGAGCTGTGCTTACGTTTGGTTGGGGACTTTATGGACAG
genomic: TTATATAAAGGGAATTGCCTGCGGAGGTCGACACAGTGCAGTAATCACAGgtaaatgtgt ... gaactgacagATGCTGGAGCTGTGCTTACGTTTGGTTGGGGACTTTATGGACAG