1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GAAGCGTACAAATGTGCTCAATGATGCCTTCCCCATTTCTCATGATGGAGAGTTTGGAACAATTAACAATTTTCGACTTGGAAGACTTCCTAAAATTCCTgtaagatgcctaaggtgttgtatttctggattttaatgttgtgtcaatgtgttgttgagtttaatatgcatggttgtcttccttctattgtatgctttta...
species | Glycine max |
transcript | GLYMA11G21490.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGTTTGGAACAATTAACAATTTTCGACTTGGAAGACTTCCTAAAATTCCT GTTGAATGGGATGAGATAAATGCTGCCTGGGGCCAAGCTTGCCTCCTTCTTEST: gi|298194263|gb|HO040911.1|HO040911
genomic: AGTTTGGAACAATTAACAATTTTCGACTTGGAAGACTTCCTAAAATTCCTgtaagatgcc ... aaatgtttagGTTGAATGGGATGAGATAAATGCTGCCTGGGGCCAAGCTTGCCTCCTTCTT
EST: AGTTTGGAATAATTAACAATTTTCGACTTGGAAGACTTCCTAAAATTCCT GTTGAATGGGATGAGATAAATGCTGCCTGGGGCCAAGCTTGCCTCCTTCTTEST: gi|57574660|gb|CX547635.1|CX547635
genomic: AGTTTGGAACAATTAACAATTTTCGACTTGGAAGACTTCCTAAAATTCCTgtaagatgcc ... aaatgtttagGTTGAATGGGATGAGATAAATGCTGCCTGGGGCCAAGCTTGCCTCCTTCTT
EST: AGTTTGGAACAATTAACAATTTTCGACTTGGAAGACTTCCTAAAATTCCT GTTGAATGGGATGAGATAAATGCTGCCTGGGGCCAAGCTTGCCTCCTTCTTEST: gi|20498067|gb|BQ272997.1|BQ272997
genomic: AGTTTGGAACAATTAACAATTTTCGACTTGGAAGACTTCCTAAAATTCCTgtaagatgcc ... aaatgtttagGTTGAATGGGATGAGATAAATGCTGCCTGGGGCCAAGCTTGCCTCCTTCTT
EST: AGTTTGGAACAATTAACAATTTTCGACTTGGAAGACTTCCTAAAATTCCT GTTGAATGGGATGAGATAAATGCTGCCTGGGGCCAAGCTTGCCTCCTTCTT
genomic: AGTTTGGAACAATTAACAATTTTCGACTTGGAAGACTTCCTAAAATTCCTgtaagatgcc ... aaatgtttagGTTGAATGGGATGAGATAAATGCTGCCTGGGGCCAAGCTTGCCTCCTTCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGCGTACAAATGTGCTCAATGATGCCTTCCCCATTTCTCATGATGGAGAGTTTGGAACAATTAACAATTTTCGACTTGGAAGACTTCCTAAAATTCCTgtaagatgcctaaggtgttgtatttctggattttaatgttgtgtcaatgtgttgttgagtttaatatgcatggttgtcttccttctattgtatgctttta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA