1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CTGATCTTTGTTCATGTGGAATCGGATAATGAAGATGTAGGAAAGCCTGTTGCAGATTATTTTGGTATCGCAGGGAATGGTCCCAAAgtaataatttcccctctcttcttaattttattttagtggttgagtcacgggattcttctcctgttaaagtcgttcagattcaaaataggaagtaaattaggtaactgatgaaatttccaatatag
species | Glycine max |
transcript | GLYMA11G20630.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TAGGAAAGCCTGTTGCAGATTATTTTGGTATCGCAGGGAATGGTCCCAAA GTACTTGCATTCACAGGAAATGATGATGGAAGAAAATTTTTGCTTGATGGAEST: gi|9821020|gb|BE556530.1|BE556530
genomic: TAGGAAAGCCTGTTGCAGATTATTTTGGTATCGCAGGGAATGGTCCCAAAgtaataattt ... tccaatatagGTACTTGCATTCACAGGAAATGATGATGGAAGAAAATTTTTGCTTGATGGA
EST: TAGGAAAGCCTG-TGCAGATTATTTTGGTATCGCAGGGAATGGTCCCAAA GTACTTGCATTCACAGGAAATGATGATGGAAGAAAATTTTTGCTTGATGGAEST: gi|7796807|gb|AW782201.1|AW782201
genomic: TAGGAAAGCCTGTTGCAGATTATTTTGGTATCGCAGGGAATGGTCCCAAAgtaataattt ... tccaatatagGTACTTGCATTCACAGGAAATGATGATGGAAGAAAATTTTTGCTTGATGGA
EST: TAGGAAAGCCTGTTGCAGATTATTTTGGTATCGCAGGGAATGGTCCCAAA GTACTTGCATTCACAGGAAATGATGATGGAAGAAAATTTTTGCTTGATGGAEST: gi|12772452|gb|BG237379.1|BG237379
genomic: TAGGAAAGCCTGTTGCAGATTATTTTGGTATCGCAGGGAATGGTCCCAAAgtaataattt ... tccaatatagGTACTTGCATTCACAGGAAATGATGATGGAAGAAAATTTTTGCTTGATGGA
EST: TAGGAAAGCCTGTTGCAGATTATTTTGGTATCGCAGGGAATGGTCCCAAA GTACTTGCATTCACAGGAAATGATGATGGAAGAAAATTTTTGCTTGATGGA
genomic: TAGGAAAGCCTGTTGCAGATTATTTTGGTATCGCAGGGAATGGTCCCAAAgtaataattt ... tccaatatagGTACTTGCATTCACAGGAAATGATGATGGAAGAAAATTTTTGCTTGATGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGATCTTTGTTCATGTGGAATCGGATAATGAAGATGTAGGAAAGCCTGTTGCAGATTATTTTGGTATCGCAGGGAATGGTCCCAAAgtaataatttcccctctcttcttaattttattttagtggttgagtcacgggattcttctcctgttaaagtcgttcagattcaaaataggaagtaaattaggtaactgatgaaatttccaatatag
- - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT