Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCCAAGATGGCAGCTTAATGATTACTTGCATGCCTTCTCGCTATGAAATCACCCAACTCACCGTTACTGGGGAATGGTCCACCACAAAGATTAATGAGgtttgcctattttaaagttttttattttttttaaattagatttttggtcctctaatttattatttaggttcaatttggtcttctaattttttttgagttc...

Basic information

species Glycine max
transcript GLYMA11G20420.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G20420.1 (Glycine max), 5'ss of exon 6
lower sequence: AT4G27490.1 (Arabidopsis thaliana), 5'ss of exon 7
TGGCCAAGATGGCAGCTTAATGATTACTTGCATGCCTTCTCGCTATGAAATCACCCAACTCACCGTTACTGGGGAATGGTCCACCACAAAGATTAATGAGgtttgcctattt-taaagttttttattttt--tttaaattagatttttggtcctctaatttattatttaggttcaatttggtcttctaattttttttgagttc
  |  ||||||||||||| ||||| || |||||||| ||||| ||||||||||| || || ||| | ||||| |||||| | ||  | || || || ||||| ||||| |   |||  | | || |  ||  |||      ||   || |      ||  | || | |    | | | | |  |  | || || ||  | |  
ATGTGAAGATGGCAGCTTTATGATGACGTGCATGCCATCTCGTTATGAAATCACTCAGCTAACCATCACTGGTGAATGGACAACACCTAATATCAACGAGgtatgcctttcaataatatctcttgtccttaatttgccgatgacggttagagacaaaaggtctt-tcttttcttagtgttgaatattgatgttattcaact--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192299065|gb|FG990393.1|FG990393
EST:     TCACCCAACTCACCGTTACTGGGGAATGGTCCACCACAAAGATTAATGAG                         GGAATGCAGCTGTGTTTGGATGCTTGTGCAAAGCTTGCGAAGATTATGAGG
genomic: TCACCCAACTCACCGTTACTGGGGAATGGTCCACCACAAAGATTAATGAGgtttgcctat ... ccacatgcagGGAATGCAGCTGTGTTTGGATGCTTGTGCAAAGCTTGCGAAGATTATGAGG
EST: gi|41145620|gb|CK605831.1|CK605831
EST:     TCACCCAACTCACCGTTACTGGGGAATGGTCCACCACAAAGATTAATGAG                         GGAATGCAGCTGTGTTTGGATGCTTGTGCAAGGCTTGCGAAGATTATGAGG
genomic: TCACCCAACTCACCGTTACTGGGGAATGGTCCACCACAAAGATTAATGAGgtttgcctat ... ccacatgcagGGAATGCAGCTGTGTTTGGATGCTTGTGCAAAGCTTGCGAAGATTATGAGG
EST: gi|192302684|gb|FG993704.1|FG993704
EST:     TCACCCAACTCACCGTTACTGGGGAATGGTCCACCACAAAGATTAATGAG                         GGAATGCAGCTGTGTTTGGATGCTTGTGCAAAGCTTGCGAAGATTATGAG-
genomic: TCACCCAACTCACCGTTACTGGGGAATGGTCCACCACAAAGATTAATGAGgtttgcctat ... ccacatgcagGGAATGCAGCTGTGTTTGGATGCTTGTGCAAAGCTTGCGAAGATTATGAGG