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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTTGCAAAACGAGTTGGGGCAAGgttggaaaattgtctttggaaaatgataatttcagcttctatcatcatttggtctttattctttttctttttagtagagtcttagttcttattttattggcag

Basic information

species Glycine max
transcript GLYMA11G15020.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G15020.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G382038_T01 (Zea mays), 5'ss of exon 7
ACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTTGCAAAACGAGTTGGGGCAAGgttggaaaattgtctttggaaaatgataatttcagcttctatcatcatttggtct-ttattctttttctttttagtagagtcttagttcttattttattggcag
|| || ||||||||||| ||||| || ||||||||||| || ||||||||  ||||||| || ||||  |    |  || |  |  | ||||  || || |  ||    | |     ||  ||| |   ||| |||||    || |   ||                  
ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAGAGAGTTGGAGCTAGgtcagtgt-tcatcat--gccattgattcttccaacgcctcatgtgaaaaactcagttactgaatttattttt----gaattgcag------------------

upper sequence: GLYMA11G15020.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G165357_T02 (Zea mays), 5'ss of exon 5
ACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTTGCAAAACGAGTTGGGGCAAGgttggaaaattgtctttggaaaatgataatttcagcttctatcatcatttggtct-ttattctttttctttttagtagagtcttagttcttattttattggcag
|| || ||||||||||| ||||| || ||||||||||| || ||||||||  ||||||| || ||||       |  || |  |  | ||||  || ||||  ||    | |     ||  |||     ||| |||||    || |   ||                  
ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAGAGAGTTGGAGCTAGgtcattgt-tcatcat--gccattgattcttccagcgcctcatgtgaaaaactcaattacagaatttattttt----gaattgcag------------------

upper sequence: GLYMA11G15020.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G300412_T01 (Zea mays), 5'ss of exon 12
ACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTTGCAAAACGAGTTGGGGCAAGgttggaaaattgtctttggaaaatgataatttcagcttctatcatcatttggtct-ttattctttttctttttagtagagtcttagttcttattttattggcag
|| || ||||||||||| ||||| || ||||||||||| || ||||||||  ||||||| || ||||  |    |  || |  |  | ||||  || ||||  ||    | |     ||  ||| |   ||| |||||    || |   ||                  
ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAGAGAGTTGGAGCTAGgtcagtgt-tcatcat--gccattgattcttccagcgcctcatgtgaaaaactcagttactgaatttattttt----gaattgcag------------------

upper sequence: GLYMA11G15020.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G044027_T02 (Zea mays), 5'ss of exon 6
ACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTTGCAAAACGAGTTGGGGCAAGgttggaaaattgtctttggaaaatgataatttcagcttctatcatcatttggtct-ttattctttttctttttagtagagtcttagttcttattttattggcag
|| || ||||||||||| ||||| || ||||||||||| || ||||||||  ||||||| || ||||  |    |  || |  |  | ||||  || || |  ||    | |     ||  |||     ||| |||| | | |                          
ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgt-tcatcat--gctattgattcttccaccgcctcatgtgaaaaactcagttacagaatttattttgaattgcag-----------------------

upper sequence: GLYMA11G15020.1 (Glycine max), 5'ss of exon 6
lower sequence: AT3G46440.1 (Arabidopsis thaliana), 5'ss of exon 5
-----------------------------------ACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTTGCAAAACGAGTTGGGGCAAGgttggaaaattgtctttggaaaatgataatttcagcttctatcatcatttggtctttattctttttctttttagtagagtcttagttcttattttattgg-cag
                                   ||||| ||||| |||||||||||||||||||||||||| || || || || || ||||| ||||||||             || |||||||||   ||      | | || | ||    | | ||  | |||   || ||     || | ||  | || ||  || |||
CTTCTCCTATCTTCTACAAGTACAACCCTGTGAAGACAATCAAGACCAATGTGATTGGCACACTGAACATGCTAGGTCTCGCCAAGCGTGTTGGAGCAAGgtt-------------tgcaaaatgataccctc-----tttttattactta-cttctgttgatcttcgcctttgtga---ctaacttactcttctaccggacag

upper sequence: GLYMA11G15020.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G59290.2 (Arabidopsis thaliana), 5'ss of exon 5
ACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTTGCAAAACGAGTTGGGGCAAGgtt-ggaaaattgtct--ttggaaaatgataatttcagc-ttctatcatcat-ttggtctttattctttttctttttagtagagtcttagttcttattttattggcag
||||| ||||| ||||||||||| ||||| |||||||| || ||||| || || ||||| ||||||||  | | ||  |||  ||   |  |  ||||  || | |||| |||  ||  | | |||| |   | ||  || |  | ||  |                      
ACAATCAAGACCAATGTGATTGGTACACTCAACATGCTCGGTCTTGCCAAGCGTGTTGGAGCAAGgttcaggacatcttctgcttcctattttctaatcacatccttctttcaaaatgctcggctttgtaactatttgttcttttcgaaacag--------------------

upper sequence: GLYMA11G15020.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 6
ACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTTGCAAAACGAGTTGGGGCAAGgttggaaaattgtctttggaaaatgataatttcagcttctatcatcatttggtctttattctttttctttttagtagagtcttagttcttattttattggcag
|||||||| ||||| || ||||| |||||||| ||||| || ||||| ||||||||||| |||||||| |  | ||| |||    |  | ||   || | |    ||||| | ||     | | | | ||   || |  ||  || | |                   
ACAATAAAAACAAACGTCATTGGTACACTGAATATGCTGGGACTTGCCAAACGAGTTGGAGCAAGgtttgggatttgacttc---attttattcctttaaccaggatcataaatt---tctcaatttattaaattatgttaatgtttaacag----------------

upper sequence: GLYMA11G15020.1 (Glycine max), 5'ss of exon 6
lower sequence: PP1S189_118V6.1 (Physcomitrella patens), 5'ss of exon 6
ACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTTGCAAAACGAGTTGGGGCAAGgttggaaaattgtctttggaaaatgataatttcagcttctatcatcatttggtctttattctttttctttttagtagagtcttagttcttattttattggcag
|| || ||||||||||||||||| || || ||||||||||| || || ||||||||||| ||||||| | |||||| | | |  |   || |   || |  |||| |  |||   ||    |      |    ||    |    | |||  | |  |   | | ||  
ACCATCAAGACAAATGTGATTGGTACGCTCAACATGCTTGGACTCGCTAAACGAGTTGGTGCAAGgt-gcaaaattctttgtatatcttgct--ctttaatttctcttgtcaccaggaaactggcagctggacttacgatttcatgttatgtatactgcaagtagctc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7233416|gb|AW568762.1|AW568762
EST:     GTGATTGGCACACTGAACATGCTTGGGCTTGCAAAACGAGTTGGGGCAAG                         GATTTTACTCACATCAACATCTGAGGTATATGGGGATCCTCTTGTGCATCC
genomic: GTGATTGGCACACTGAACATGCTTGGGCTTGCAAAACGAGTTGGGGCAAGgttggaaaat ... ttattggcagGATTTTACTCACATCAACATCTGAGGTATATGGGGATCCTCTTGTGCATCC
EST: gi|17022039|gb|BM093073.1|BM093073
EST:     GTGATTGGCACACTGAACATGCTTGGGCTTGCAAAACGAGTTGGGGCAAG                         GATTTTACTCACATCAACATCTGAGGTATATGGGGATCCTCTTGTGCATCC
genomic: GTGATTGGCACACTGAACATGCTTGGGCTTGCAAAACGAGTTGGGGCAAGgttggaaaat ... ttattggcagGATTTTACTCACATCAACATCTGAGGTATATGGGGATCCTCTTGTGCATCC
EST: gi|192301457|gb|FG994081.1|FG994081
EST:     GTGATTGGCACACTGAACATGCTTGGGCTTGCAAAACGAGTTGGGGCAAG                         GATTTTACTCACATCAACATCTGAGGTATATGGGGATCCTCTTGTGCATCC
genomic: GTGATTGGCACACTGAACATGCTTGGGCTTGCAAAACGAGTTGGGGCAAGgttggaaaat ... ttattggcagGATTTTACTCACATCAACATCTGAGGTATATGGGGATCCTCTTGTGCATCC