Sequence
atgc intronic sequence ATGC exonic sequenceGTGCTGCGCATGCCGAGAATGAGCATTTTACATATGATGTGACTTCAAAGTTGAAAACTAAGTTTTTGGGAAATTCTGTTGATGTTTACCCTGTTGGAAGgtgacaaatatattgcatttgtttagtagatttcctctgttatatcgtcttattcttcttgttactgatgttgtttgtattatttcaagttccaactctg...
Basic information
species | Glycine max |
transcript | GLYMA11G14770.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA11G14770.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G174644_T01 (Zea mays), 5'ss of exon 6
GTGCTGCGCATGCCGAGAATGAGCATTTTACATATGATGTGACTTCAAAGTTGAAAACTAAGTTTTTGGGAAATTCTGTTGATGTTTACCCTGTTGGAAGgtgacaaat--atattgcatttgtttagtagatttcctc-tgttatatcgtcttattcttctt---gttactg--atgttgtttgtattatttcaagttccaactctg--------------------------------------------------------
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GTGTTGCTCACTGCGAGAATGAACATTTTACTTACGATATCACGTCTAAGTTGAAGACCAAGTTTTTGGGAAATTCAGTGGAAATTTACCCAGTTGGAAGgtgaattattagaattgtatttgtttcttggagatctgcgtgccttaatatttttgacccatttgagctaatggaataaaatggaaaccattttgaaggctgcgttgggaccacttgtataaatcagtaaatctaacccctctaatataatttccatgtcacag
upper sequence: GLYMA11G14770.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G114126_T01 (Zea mays), 5'ss of exon 6
GTGCTGCGCATGCCGAGAATGAGCATTTTACATATGATGTGACTTCAAAGTTGAAAACTAAGTTTTTGGGAAATTCTGTTGATGTTTACCCTGTTGGAAGgtgacaaat--atattgcatttgttt--agtagatttcctctgtt--atatcgtcttatt----------------cttcttgttactgatgttgtttgtattatttcaagttccaactctg--------------------
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GTGCTGCTCACTGTGAGAATGAGCATTTTACTTATGATATCACGTCTAAGGTGAAGACAAAGTTCTTGGGAAATTCATTGGAAATCTATCCAGTTGGAAGgttaattgttagaattgtatttctttcttggagatctgtatggcttaaaaatattttattggaataaaatggaaacctttttgaaggctgaattgggaccagttattctaatccctgctgtaatataatttccatgtcacag
upper sequence: GLYMA11G14770.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G59420.1 (Arabidopsis thaliana), 5'ss of exon 6
GTGCTGCGCATGCCGAGAATGAGCATTTTACATATGATGTGACTTCAAAGTTGAAAACTAAGTTTTTGGGAAATTCTGTTGATGTTTACCCTGTTGGAAGgtgacaaatatattgcatttgtttagtagatttcctctgttatatcgtcttattcttcttgttactgatgttgttt---gtattatttcaagttc-caactctg
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GTGCTGGTCATGCCGAGAACGAGCACTTCATTTACGACATCACATCAAAGTTGAAAACTAAACTTTTGGGTAACTCTGTTGATGTTTACCCTGTGGGAAGgt----aattttgttcctatttatggtccgacctctctctcactttggtataggctctaggaagaaatttttgcttcatgtactctttcctttccatagttctc
upper sequence: GLYMA11G14770.1 (Glycine max), 5'ss of exon 6
lower sequence: PP1S20_97V6.1 (Physcomitrella patens), 5'ss of exon 6
GTGCTGCGCATGCCGAGAATGAGCATTTTACATATGATGTGACTTCAAAGTTGAAAACTAAGTTTTTGGGAAATTCTGTTGATGTTTACCCTGTTGGAAGgtgacaaatatattgcatttgtttagtagatttcctctgttatatcgtcttattcttcttgttactgatgttgtttgtattatttcaagttccaactctg--------
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GAACTGCTCATGCGGAGAATGAGCACTTCAGCTACGATGTTACTTCAAAATTGAAGACCAAGTTTCTTGGAAATTCGGTGGATGTGTTCCCTCTTGGAAGg---caagtgtatccca---gtttgagtgctcccttatgactaatacgataatatgcagcgtgact--cgttagtccggtcatttcaaattttggcagtatcccagagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151412307|gb|EV282119.1|EV282119EST: TTGAAAACTAAGTTTTTGGGAAATTCTGTTGATGTTTACCCTGTTGGAAG AACTCGTGTGACCCTTAAGAGAGATGGTGTTGTCTTAGATTTGGTGCCAC-
genomic: TTGAAAACTAAGTTTTTGGGAAATTCTGTTGATGTTTACCCTGTTGGAAGgtgacaaata ... atgtttgcagAACTCGTGTGACCCTTAAGAGAGATGGTGTTGTCTTAGATTTGGTGCCACC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGCTGCGCATGCCGAGAATGAGCATTTTACATATGATGTGACTTCAAAGTTGAAAACTAAGTTTTTGGGAAATTCTGTTGATGTTTACCCTGTTGGAAGgtgacaaatatattgcatttgtttagtagatttcctctgttatatcgtcttattcttcttgttactgatgttgtttgtattatttcaagttccaactctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG