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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATGGACTTGCATCCCAAAGAAGAGAATTAGCCAACAAACTTCTTGGCCATGTTCTGACACTTAGCCTTCAAATGTATGGTTGCCGTGTCATCCAGAAGgtattgagaatatttggttgcattagttgatatgtatatgtttgtccctctgtaattttctgaatgccttatcatttttcttttgttctttcaattatatatctccctttag

Basic information

species Glycine max
transcript GLYMA11G14500.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G14500.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv06s0004g05100.t01 (Vitis vinifera), 5'ss of exon 4
GCATGGACTTGCATCCCAAAGAAGAGAATTAGCCAACAAACTTCTTGGCCATGTTCTGACACTTAGCCTTCAAATGTATGGTTGCCGTGTCATCCAGAAGgtattgagaatatttggttgcattagttgatatgtatatgtttgtccctctgtaattttctgaatgccttat-catttttcttttgttctttcaattatatatctccctttag
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GCATGGACTAGTATCCCAGAGAAGAGAACTGGCTGGCAAGCTTTATGGTCATGTACTGACACTTAGCCTTCAAATGTATGGTTGTCGAGTGATCCAAAAGgtacca-------ttagttttgccactaaacctcaacttgacttttgctgtgtgatattgtgtgttgttcacataaaggtctctctatctttca-----ttatctgcagttg-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23057383|gb|BU578057.1|BU578057
EST:     ATGTTCTGACACTTAGCCTTCAAATGTATGGTTGCCGTGTCATCCAGAAG                         GCCATCGAAGTTGTTGATCTGGATCAGAAGATAGAGATGGTTCAAGAGCTT
genomic: ATGTTCTGACACTTAGCCTTCAAATGTATGGTTGCCGTGTCATCCAGAAGgtattgagaa ... ctccctttagGCCATCGAAGTTGTTGATCTGGATCAGAAGATAGAGATGGTTCAAGAGCTT