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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTAATGACATAGCTGATTTTCATGCTAATACACATATCCCAGTTGTTGTTGGATCTCAAATGCGGTATGAAATCACAGGCGATCCACTTTATCAGgtgatttgcttcactcacattatatattactgatatatatttcattgagtttaaatggagttttatttatttgttatttattggcataataatattattt...

Basic information

species Glycine max
transcript GLYMA11G14000.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G14000.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv06s0004g01650.t01 (Vitis vinifera), 5'ss of exon 5
GCTAATGACATAGCTGATTTTCATGCTAATACACATATCCCAGTTGTTGTTGGATCTCAAATGCGGTATGAAATCACAGGCGATCCACTTTATCAGgtgatttgcttcactcacattat--atattactga-tatatatttcattgagtttaaatggagttttatttatttgttatttattggcataataatattattt-----
||| |||||||| |||  |||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||| || |||||||||||| |||| | |||||      | ||| |  | | |  ||| |  |    |||   |    |||     || |   |  |    | ||||||   || ||||||| | |     
GCTGATGACATATCTGGATTTCATGCCAATACACATATCCCAATTGTTGTTGGAGCTCAAATGCGGTATGAAATCACTGGTGATCCACTTTATAAGgtaaattgctgtggataaattctggacagtcttgactgcaatcgtcaacaaagacaaagatgtttgtgcctgatcacaagttattgttcta-taatattgtgtgacag

upper sequence: GLYMA11G14000.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv06s0004g01770.t01 (Vitis vinifera), 5'ss of exon 5
GCTAATGACATAGCTGATTTTCATGCTAATACACATATCCCAGTTGTTGTTGGATCTCAAATGCGGTATGAAATCACAGGCGATCCACTTTATCAGgtgatttgcttcactcacattatatattactg-atatatatttcattgagtttaaatggagttttatttatttgt-tatttattggcataataatattattt
||| ||  |||| ||| ||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||| |||| || |||||||||||  |||||| |||||  |   | |||||  || | |  | ||||| |  |   | |  |||||   | | |  |  |  | | | |      ||||| || | ||| 
GCTGATAGCATATCTGGTTTTCATGCCAATACACATATCCCAGTTGTTATTGGATCCCAAATGCGGTATGAAGTCACTGGTGATCCACTTTACAAGgtgagttgctgtaaataaattatggatcatttcaaatatactgaacaaaatc-aaatgtgttctaaactgctaatgtgtgtgccta-ataattatgtgattc

upper sequence: GLYMA11G14000.1 (Glycine max), 5'ss of exon 6
lower sequence: PP1S60_268V6.1 (Physcomitrella patens), 5'ss of exon 6
GCTAATGACATAGCTGATTTTCATGCTAATACACATATCCCAGTTGTTGTTGGATCTCAAATGCGGTATGAAATCACAGGCGATCCACTTTATCAGgtgatttgcttcactcacattatatattactgatatatatttcattgagtttaaatggagttttatttatttgttatttattggcataataatattattt-
||  || |  |  ||| ||||||| | ||||||||||| ||| ||||||||||| |||| ||||| |||||  | ||  |||||| | | ||    ||   || |  | || ||   |||  || |  |  |  |||   |   | |     ||  |    ||| || ||   |  || |      | ||  | |  
GCGGATCATCTTTCTGGTTTTCATTCGAATACACATATTCCAATTGTTGTTGGAGCTCAGATGCGTTATGAGGTGACCAGCGATCTAATCTACAGAgtatgttacccccctaacgcaatagtttcccaaagttgattaagtcatgctctg-cggcatacactttcttggtagctcttttgagctgaagtacaactgg