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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTTATCTTCTCTTAAAAGGATCATGTCTTTGCCTGATGATACAAGTATTTACTGTGGTCATGAATATACATCGgttagttgtttccattctccttctttattttccctgcttcttttctaagcgggctgcaacattgactttggtgctttgaaatttggcag

Basic information

species Glycine max
transcript GLYMA11G13470.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G13470.1 (Glycine max), 5'ss of exon 6
lower sequence: AT2G31350.1 (Arabidopsis thaliana), 5'ss of exon 6
ATGTTATCTTCTCTTAAAAGGATCATGTCTTTGCCTGATGATACAAGTATTTACTGTGGTCATGAATATACATCGgttagttgt-ttccattctccttctttattttccctgcttcttttctaagcgggctgcaacat-tgactttggtgctttgaaatttggcag
||| |  |||||||  ||| |||||  ||||| || ||||| ||||| || |||||||||||||||||||||  |||  |||||  |  | | | ||  | |   |     | || ||    ||   |       ||  ||||| |  |    |     |  ||||
ATGCTTGCTTCTCTCCAAAAGATCACATCTTTACCAGATGACACAAGCATATACTGTGGTCATGAATATACACTGgtctgttgtactttagtattctagtgttggtgaaaagttttttactaaaagagataatctcagatgactataatttgatttgggtgtgcag

upper sequence: GLYMA11G13470.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv05s0102g01180.t01 (Vitis vinifera), 5'ss of exon 8
ATGTTATCTTCTCTTAAAAGGATCATGTCTTTGCCTGATGATACAAGTATTTACTGTGGTCATGAATATACATCGgttagttgtttccattctccttctttattttccctgcttcttttctaagcgggctgcaacattgactttggtgctttgaaatttggcag
|||   ||||| ||||  | ||| ||||||||||| || || |||| ||| || ||||||||||||||||||| ||| |||  ||| | |  ||    |||  |     |  ||    ||  | |        |   | |  |  |||      | ||||  ||
ATGCATTCTTCCCTTAGTAAGATTATGTCTTTGCCAGACGAAACAAATATCTATTGTGGTCATGAATATACATTGgtaagtcattttcttcttcagcttttgctcaggtttgttaagctcacaacttttgaagaagcttaactatgtgaaacccattttgatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192305332|gb|FG997570.1|FG997570
EST:     TGTCTTTGCCTGATGATACAAGTATTTACTGTGGTCATGAATATGCATCG                         AGTAATTCAAAGTTTGCCTTGTCTATAGAACCTGAAAACAAGGAACTTCAA
genomic: TGTCTTTGCCTGATGATACAAGTATTTACTGTGGTCATGAATATACATCGgttagttgtt ... aatttggcagAGTAATTCAAAGTTTGCCTTGTCTATAGAACCTGAAAACAAGGAACTTCAA
EST: gi|6847533|gb|AW349742.1|AW349742
EST:     TGTCTTTGCCTGATGATACAAGTATTTACTGTGGTCATGAATATACATCG                         AGTAATTCAAAGTTTGCCTTGTCTATAGAACCTGAAAGCAAGGAACTTCAA
genomic: TGTCTTTGCCTGATGATACAAGTATTTACTGTGGTCATGAATATACATCGgttagttgtt ... aatttggcagAGTAATTCAAAGTTTGCCTTGTCTATAGAACCTGAAAACAAGGAACTTCAA
EST: gi|4290610|gb|AI441643.1|AI441643
EST:     TGTCTTTGCCTGATGATACAAGTATTTACTGTGGTCATGAATATACATCG                         AGTAATTCAAAGTTTGCCTTGTCTATAGAACCTGAAAACAAGGAACTTCAA
genomic: TGTCTTTGCCTGATGATACAAGTATTTACTGTGGTCATGAATATACATCGgttagttgtt ... aatttggcagAGTAATTCAAAGTTTGCCTTGTCTATAGAACCTGAAAACAAGGAACTTCAA
EST: gi|208097209|gb|GD895856.1|GD895856
EST:     TGTCTTTGCCTGATGATACAAGTATTTACTGTGGTCATGAATATACATCG                         AGTAATTCAAAGTTTGCCTTGTCTATAGAACCTGAAAACAAGGAACTTCAA
genomic: TGTCTTTGCCTGATGATACAAGTATTTACTGTGGTCATGAATATACATCGgttagttgtt ... aatttggcagAGTAATTCAAAGTTTGCCTTGTCTATAGAACCTGAAAACAAGGAACTTCAA